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| 1 | Bed planting of wheat(Triticum aestivum L.)improves nitrogen use efficiency and grain yield compared to flat planting显示文摘Conventional flat planting is commonly used for growing wheat in Pakistan and the crop is irrigated by flood irrigation, but it leads to ineffective use of applied nitrogen owing to poor aeration and leaching and volatilization losses. The practice also results in greater crop lodging, lower water use efficiency, and crusting of the soil surface. In contrast, bed planting of wheat not only saves water but improves fertilizer use efficiency and grain yield. Three years of pooled data from the present study showed that wheat planting on beds and nitrogen application at 120 kg ha-1produced 15.06% higher grain yield than flat planting at the same nitrogen rate. Similarly, 25.04%, 15.02%, 14.59%, and 29.83% higher nitrogen uptake, nitrogen use, and agronomic and recovery efficiencies, respectively, were recorded for bed compared to flat planting. Wheat planting on beds with a nitrogen application of80 kg ha-1gave a yield similar to that of flat planting with 120 kg ha-1nitrogen. However,the economic return was 29% higher in bed planting as compared to flat planting, when nitrogen was applied at 120 kg ha-1. | Abdul Majeed Atif Muhmood Abid Niaz Shahid Javid Zahid Ashfaq Ahmad Syed Shahid Hussain Shah Asrar Hussain Shah | 2015 | The Crop Journal2015，3，2： | 3 |
| 2 | Role of SNPs in determining QTLs for major traits in cotton显示文摘A single nucleotide polymorphism is the simplest form of genetic variation among individuals and can induce minor changes in phenotypic,physiological and biochemical characteristics.This polymorphism induces various mutations that alter the sequence of a gene which can lead to observed changes in amino acids.Several assays have been developed for identification and validation of these markers.Each method has its own advantages and disadvantages but genotyping by sequencing is the most common and most widely used assay.These markers are also associated with several desirable traits like yield,fibre quality,boll size and genes respond to biotic and abiotic stresses in cotton.Changes in yield related traits are of interest to plant breeders.Numerous quantitative trait loci with novel functions have been identified in cotton by using these markers.This information can be used for crop improvement through molecular breeding approaches.In this review,we discuss the identification of these markers and their effects on gene function of economically important traits in cotton. | MAJEED Sajid RANA Iqrar Ahmad ATIF Rana Muhammad ALI Zulfiqar HINZE Lori AZHAR Muhammad Tehseen | 2019 | Journal of Cotton Research2019，2，1： | 2 |
| 3 | Selenium plays a modulatory role against cerebral ischemia-induced neuronal damage in rat hippocampus显示文摘 | Yousuf S Atif F Ahmad M | 2007 | Brain Res2007，11，47： | 1 |
| 4 | Influence of P-enriched compost application on economics and P use efficiency of a maize–wheat rotation system显示文摘Crop phosphorus(P) deficiency and poor utilization of added P is a major agricultural problem due to reduced solubility of soil P and rapid fixation or precipitation of applied P fertilizer in alkaline and calcareous soils. The effects of P-enriched compost and single superphosphate(SSP) fertilization on maize and wheat yields and P use efficiency in a maize–wheat rotation system were studied for three years. On a three-year average, grain yields of maize and wheat after application of P-enriched compost were increased by 18% and 24%, respectively, in comparison with sole addition of a recommended dose of SSP fertilizer. P-enriched compost addition to soil increased maize and wheat yields by 12% and 17%, respectively, compared to P fertilizer plus FYM incorporation. Soil available P concentration and P uptake were affected significantly by the addition of P-enriched compost. On average, increases in P recovery, use efficiency, and agronomic efficiency of 52%, 18%, and 43% were recorded in maize and increases of 50%, 23%, and 49% in wheat. P-enriched compost application yielded 30% and 32%higher economic returns in maize and wheat than SSP fertilization alone. | Abdul Majeed Shahzada Munawar Mehdi Abid Niaz Abid Mahmood Ehsan-Ul-Haq Naeem Ahmad Shahid Javid Atif Mehmood | 2018 | The Crop Journal2018，6，6： | 1 |
| 5 | Sperm membrane i ipid li- posomes can evoke an effective immune response against encapsulated antigen in BALB/e mice显示文摘 | ATIF S M SALAM N AHMAD N | 2008 | Vaccine2008，26，46： | 1 |
| 6 | Resveratrol exerts its neu-roprotective effect by modulating mitochondrial dysfunctions and associated cell death during cerebral ischemia 显示文摘 | Yousuf S Atif F Ahmad M | 2009 | Brain Res2009，23，1250： | 1 |
| 7 | Resveratrol exerts its neuroprotective effect by modulating mitochondrial dysfunctions and associated cell death during cerebral ischemia 显示文摘 | Yousuf S Atif F Ahmad M | 2009 | Brain Res2009，1250，2： | 1 |
| 8 | Foliar Application of Phosphorus Enhances Photosynthesis and Biochemical Characteristics of Maize under Drought Stress显示文摘Water is essential for the growth period of crops;however,water unavailability badly affects the growth and physiological attributes of crops,which considerably reduced the yield and yield components in crops.Therefore,a pot experiment was conducted to investigate the effect of foliar phosphorus(P)on morphological,gas exchange,biochemical traits,and phosphorus use efficiency(PUE)of maize(Zea mays L.)hybrids grown under normal as well as water deficit situations at the Department of Agronomy,University of Agriculture Faisalabad,Pakistan in 2014.Two different treatments(control and P@8 kg ha^(−1))and four hybrids(Hycorn,31P41,65625,and 32B33)of maize were tested by using a randomized complete block design(RCBD)with three replications.Results showed that the water stress caused a remarkable decline in total soluble protein(9.7%),photosynthetic rate(9.4%)and transpiration rate(13.4%),stomatal conductance(10.2%),and internal CO_(2)rate(20.4%)comparative to well-watered control.An increase of 37.1%,36.8%,and 24.5%were recorded for proline,total soluble sugar,and total free amino acid,respectively.However,foliar P application minimized the negative impact of drought by improving plant growth,physio-biochemical attributes,and PUE in maize plants under water stress conditions.Among the hybrids tested,the hybrid 6525 performed better both under stress and non-stress conditions.These outcomes confirmed that the exogenous application of P improved drought stress tolerance by modulating growth,physio-biochemical attributes,and PUE of maize hybrids. | Zahoor Ahmad Ejaz Ahmad Waraich Muhammad Zia ur Rehman Muhammad Ashar Ayub Muhammad Usman Hesham Alharby Atif Bamagoos Celaleddin Barutçular Muhammad Ali Raza FatihÇiğ Ayman El Sabagh | 2021 | Phyton-International Journal of Experimental Botany2021，90，2： | 1 |
| 9 | Theoretical investigations of half-metallic ferromagnetism in new Half-Heusler YCrSb and YMnSb alloys using first-principle calculations显示文摘Structural,electronic,and magnetic properties of new predicted half-Heusler YCrSb and YMnSb compounds within the ordered MgAgAs Clb-type structure are investigated by employing first-principal calculations based on density functional theory.Through the calculated total energies of three possible atomic placements,we find the most stable structures regarding YCrSb and YMnSb materials,where Y,Cr(Mn),and Sb atoms occupy the(0.5,0.5,0.5),(0.25,0.25,0.25),and(0,0,0) positions,respectively.Furthermore,structural properties are explored for the non-magnetic and ferromagnetic and anti-ferromagnetic states and it is found that both materials prefer ferromagnetic states.The electronic band structure shows that YCrSb has a direct band gap of 0.78 eV while YMnSb has an indirect band gap of 0.40 eV in the majority spin channel.Our findings show that YCrSb and YMnSb materials exhibit half-metallic characteristics at their optimized lattice constants of 6.67 and 6.56 ,respectively.The half-metallicities associated with YCrSb and YMnSb are found to be robust under large in-plane strains which make them potential contenders for spintronic applications. | M Atif Sattar Muhammad Rashid M Raza Hashmi S A Ahmad Muhammad Imran Fayyaz Hussain | 2016 | Chinese Physics B2016，25，10： | 1 |
| 10 | Liver-Tumor Detection Using CNN ResUNet显示文摘Liver tumor is the fifth most occurring type of tumor in men and the ninth most occurring type of tumor in women according to recent reports of Global cancer statistics 2018.There are several imaging tests like Computed Tomography(CT),Magnetic Resonance Imaging(MRI),and ultrasound that can diagnose the liver tumor after taking the sample from the tissue of the liver.These tests are costly and time-consuming.This paper proposed that image processing through deep learning Convolutional Neural Network(CNNs)ResUNet model that can be helpful for the early diagnose of tumor instead of conventional methods.The existing studies have mainly used the two Cascaded CNNs for liver segmentation and evaluation of Region Of Interest(ROI).This study uses ResUNet,an updated version of U-Net and ResNet Models that utilize the service of Residential blocks.We apply over method on the 3D-IRCADb01 dataset that is based on CT slices of liver tumor affected patients.The results showed the True Value Accuracy around 99%and F1 score performance around 95%.This method will be helpful for early and accurate diagnose of the Liver tumor to save the lives of many patients in the field of Biotechnology. | Muhammad Sohaib Aslam Muhammad Younas Muhammad Umar Sarwar Muhammad Arif Shah Atif Khan MIrfan Uddin Shafiq Ahmad Muhammad Firdausi Mazen Zaindin | 2021 | Computers, Materials & Continua2021，，5： | 0 |
| 11 | Offshore Software Maintenance Outsourcing Process Model Validation:A Case Study Approach显示文摘The successful execution and management of Offshore Software Maintenance Outsourcing(OSMO)can be very beneficial for OSMO vendors and the OSMO client.Although a lot of research on software outsourcing is going on,most of the existing literature on offshore outsourcing deals with the outsourcing of software development only.Several frameworks have been developed focusing on guiding software systemmanagers concerning offshore software outsourcing.However,none of these studies delivered comprehensive guidelines for managing the whole process of OSMO.There is a considerable lack of research working on managing OSMO from a vendor’s perspective.Therefore,to find the best practices for managing an OSMO process,it is necessary to further investigate such complex and multifaceted phenomena from the vendor’s perspective.This study validated the preliminary OSMO process model via a case study research approach.The results showed that the OSMO process model is applicable in an industrial setting with few changes.The industrial data collected during the case study enabled this paper to extend the preliminary OSMO process model.The refined version of the OSMO processmodel has four major phases including(i)Project Assessment,(ii)SLA(iii)Execution,and(iv)Risk. | Atif Ikram Masita Abdul Jalil Amir Bin Ngah Adel Sulaiman Muhammad Akram Ahmad Salman Khan | 2023 | Computers, Materials & Continua2023，，3： | 0 |
| 12 | First-principles prediction of magnetically ordered half-metals above room temperature显示文摘Half-metallicity(HM)offers great potential for engineering spintronic applications,yet only few magnetic materials present metallicity in just one spin channel.In addition,most HM systems become magnetically disordered at temperatures well below ambient conditions,which further hinders the development of spin-based electronic devices.Here,we use first-principles methods based on density functional theory(DFT)to investigate the electronic,magnetic,structural,mixing,and vibrational properties of 90 XYZ half-Heusler(HH)alloys(X=Li,Na,K,Rb,Cs;Y=V,Nb,Ta;Z=Si,Ge,Sn,S,Se,Te).We disclose a total of 28 new HH compounds that are ferromagnetic,vibrationally stable,and HM,with semiconductor band gaps in the range of 1-4 eV and HM band gaps of 0.2-0.8 eV.By performing Monte Carlo simulations of a spin Heisenberg model fitted to DFT energies,we estimate the Curie temperature,T_(C),of each HM compound.We find that 17 HH HM remain magnetically ordered at and above room temperature,namely,300≤T_(C)≤450 K,with total magnetic moments of 2 and 4 mB.A further materials sieve based on zero-temperature mixing energies let us to conclude 5 overall promising HH HM that remain magnetically ordered at and above room temperature:NaVSi,RbVTe,CsVS,CsVSe,and RbNbTe.We also predict 2 semiconductor materials that are ferromagnetic at ambient conditions:LiVSi and LiVGe. | Muhammad Atif Sattar S.Aftab Ahmad Fayyaz Hussain Claudio Cazorla | 2019 | Journal of Materiomics2019，5，3： | 0 |
| 13 | Two novel variants in CYP1B1 gene: a major contributor of autosomal recessive primary congenital glaucoma with allelic heterogeneity in Pakistani patients显示文摘AIM: To find the CYP1 B1 mutations associated with primary congenital glaucoma(PCG) in Pakistani consanguineous pedigrees. METHODS: After getting informed consent, 11 consanguineous pedigrees belonging to different ethnic groups were enrolled. Detailed medical history was recorded and pedigrees were drawn. The standard ophthalmological examination was done to characterize the phenotype. Genomic DNA was extracted from 10 mL whole blood and coding exons and exon intron boundaries of CYP1 B1 gene were directly sequenced. Bioinformatics tools were used to model the mutant protein and predict the effect of novel variants on protein structure and function. RESULTS: Sequencing analysis revealed 5 different CYP1 B1 variants in 7 families(7/11; 64%), including two novel variants. A common mutation, p.R390 H was found in four families, whereas p.P437 L was found once in a family. Two novel variants, a homozygous non sense variant p.L13* and a compound heterozygous variant, p.P350 T along with p.V364 M were segregating with PCGin two families. All the patients had the variable onset and severity of the disease. The success rate of early clinical interventions was observed dependent on mutation types and position. Two different haplotypes were associated with frequently found mutation, p.R390 H. CONCLUSION: Identification of novel CYP1 B1 variants reassert the genetic heterogeneity of Pakistani PCG patients. The patients with missense mutations show severe phenotypic presentations and poor vision after surgical interventions as compare to patients with null variants. This may help to better understand the role of CYP1 B1 mutations in the development of PCG and its course of pathogenicity. | Yar Muhammad Waryah Muhammad Iqbal Shakeel Ahmed Sheikh Muhammad Azhar Baig Ashok Kumar Narsani Muhammad Atif Munir Ahmad Bhinder Attiq Ur Rahman Azam Iqbal Memon Muhammad Suleman Pirzado Ali Muhammad Waryah | 2019 | International Journal of Ophthalmology(English edition)2019，12，1： | 0 |
| 14 | Detection of ROS and translocation of ERP-57 in apoptotic induced human neuroblastoma(SH-SY5Y)cells显示文摘Several toxic compounds are known to induce apoptosis in mammalian cell lines.The human neuroblastoma cells(SHSH-SY5Y)were exposed to the phosphatase inhibiting toxin okadaic acid(OA)or hydrogen peroxide(H2O2)to induce apoptosis as well as generate reactive oxygen species(ROS).Mitoxantrone(MXT)was used as a positive control for apoptosis.The SHSH-SY5Y cells were transfected with eukaryotic expression plasmid pHyPer-dMito encoding mitochondrial-targeted fluorescent or pHyPer-dCito encoding cytoplasmic-targeted fluorescent sensor for hydrogen peroxide(HyPer).The ERp57,also called GRP58(Glucose-regulated protein 58),is a stress protein induced in conditions like glucose starvation and viral infection.Recently ERp57 was shown to translocate from the endoplasmatic reticulum to the cell surface in anthracycline-induced apoptotic cells.ERp57 co-translocation together with calreticulin has been suggested to be crucial for recognizing tumor cells to induce immunogenic cell death.ERp57 translocation after exposure to okadaic acid was studied using immunofluorescence and confocal microscopy.These studies indicated that okadaic acid has induced the translocation of ERp57 to the cellular membrane. | ATIF KAMIL MUBARAK ALI KHAN MUHAMMAD AASIM NADIR ZAMAN KHAN RAHAM SHER KHAN MUHSIN JAMAL WAQAR AHMAD MIR AZAM KHAN FAZAL JALIL | 2019 | BIOCELL2019，43，3： | 0 |
| 15 | Comparative analysis of SIMILAR to RCD ONE(SRO)family from tetraploid cotton species and their diploid progenitors depict their significance in cotton growth and development显示文摘Background SRO(Similar to RCD1)genes family is largely recognized for their importance in the growth,develop-ment,and in responding to environmental stresses.However,genome-wide identification and functional characteri-zation of SRO genes from cotton species have not been reported so far.Results A total of 36 SRO genes were identified from four cotton species.Phylogenetic analysis divided these genes into three groups with distinct structure.Syntenic and chromosomal distribution analysis indicated uneven distribu-tion of GaSRO,GrSRO,GhSRO,and GbSRO genes on A2,D5 genomes,Gh-At,Gh-Dt,Gb-At,and Gb-Dt subgenomes,respectively.Gene duplication analysis revealed the presence of six duplicated gene pairs among GhSRO genes.In promoter analysis,several elements responsive to the growth,development and hormones were found in GhSRO genes,implying gene induction during cotton growth and development.Several miRNAs responsive to plant growth and abiotic stress were predicted to target 12 GhSRO genes.Organ-specific expression profiling demonstrated the roles of GhSRO genes in one or more tissues.In addition,specific expression pattern of some GhSRO genes dur-ing ovule development depicted their involvement in these developmental processes.Conclusion The data presented in this report laid a foundation for understanding the classification and functions of SRO genes in cotton. | SHABAN Muhammad TABASSUM Riaz RANA Iqrar Ahmad ATIF Rana Muhammad AZMAT Muhammad Abubakkar IQBAL Zubair MAJEED Sajid AZHAR Muhammad Tehseen | 2024 | Journal of Cotton Research2024，7，1： | 0 |
| 16 | Project Assessment in Offshore Software Maintenance Outsourcing Using Deep Extreme Learning Machines显示文摘Software maintenance is the process of fixing,modifying,and improving software deliverables after they are delivered to the client.Clients can benefit from offshore software maintenance outsourcing(OSMO)in different ways,including time savings,cost savings,and improving the software quality and value.One of the hardest challenges for the OSMO vendor is to choose a suitable project among several clients’projects.The goal of the current study is to recommend a machine learning-based decision support system that OSMO vendors can utilize to forecast or assess the project of OSMO clients.The projects belong to OSMO vendors,having offices in developing countries while providing services to developed countries.In the current study,Extreme Learning Machine’s(ELM’s)variant called Deep Extreme Learning Machines(DELMs)is used.A novel dataset consisting of 195 projects data is proposed to train the model and to evaluate the overall efficiency of the proposed model.The proposed DELM’s based model evaluations achieved 90.017%training accuracy having a value with 1.412×10^(-3) Root Mean Square Error(RMSE)and 85.772%testing accuracy with 1.569×10^(-3) RMSE with five DELMs hidden layers.The results express that the suggested model has gained a notable recognition rate in comparison to any previous studies.The current study also concludes DELMs as the most applicable and useful technique for OSMO client’s project assessment. | Atif Ikram Masita Abdul Jalil Amir Bin Ngah Saqib Raza Ahmad Salman Khan Yasir Mahmood Nazri Kama Azri Azmi Assad Alzayed | 2023 | Computers, Materials & Continua2023，，1： | 0 |
| 17 | A Bio-Inspired Routing Optimization in UAV-enabled Internet of Everything显示文摘Internet of Everything(IoE)indicates a fantastic vision of the future,where everything is connected to the internet,providing intelligent services and facilitating decision making.IoE is the collection of static and moving objects able to coordinate and communicate with each other.The moving objects may consist of ground segments and ying segments.The speed of ying segment e.g.,Unmanned Ariel Vehicles(UAVs)may high as compared to ground segment objects.The topology changes occur very frequently due to high speed nature of objects in UAV-enabled IoE(Ue-IoE).The routing maintenance overhead may increase when scaling the Ue-IoE(number of objects increases).A single change in topology can force all the objects of the Ue-IoE to update their routing tables.Similarly,the frequent updating in routing table entries will result more energy dissipation and the lifetime of the Ue-IoE may decrease.The objects consume more energy on routing computations.To prevent the frequent updation of routing tables associated with each object,the computation of routes from source to destination may be limited to optimum number of objects in the Ue-IoE.In this article,we propose a routing scheme in which the responsibility of route computation(from neighbor objects to destination)is assigned to some IoE-objects in the Ue-IoE.The route computation objects(RCO)are selected on the basis of certain parameters like remaining energy and mobility.The RCO send the routing information of destination objects to their neighbors once they want to communicate with other objects.The proposed protocol is simulated and the results show that it outperform state-of-the-art protocols in terms of average energy consumption,messages overhead,throughput,delay etc. | Masood Ahmad Fasee Ullah Ishtiaq Wahid Atif Khan M.Irfan Uddin Abdullah Alharbi Wael Alosaimi | 2021 | Computers, Materials & Continua2021，，4： | 0 |
| 18 | Encryption Algorithm for Securing Non-Disclosure Agreements in Outsourcing Offshore Software Maintenance显示文摘Properly created and securely communicated,non-disclosure agreement(NDA)can resolve most of the common disputes related to outsourcing of offshore software maintenance(OSMO).Occasionally,these NDAs are in the form of images.Since the work is done offshore,these agreements or images must be shared through the Internet or stored over the cloud.The breach of privacy,on the other hand,is a potential threat for the image owners as both the Internet and cloud servers are not void of danger.This article proposes a novel algorithm for securing the NDAs in the form of images.As an agreement is signed between the two parties,it will be encrypted before sending to the cloud server or travelling through the public network,the Internet.As the image is input to the algorithm,its pixels would be scrambled through the set of randomly generated rectangles for an arbitrary amount of time.The confusion effects have been realized through an XOR operation between the confused image,and chaotic data.Besides,5D multi-wing hyperchaotic system has been employed to spawn the chaotic vectors due to good properties of chaoticity it has.The machine experimentation and the security analysis through a comprehensive set of validation metric vividly demonstrate the robustness,defiance to the multifarious threats and the prospects for some real-world application of the proposed encryption algorithm for the NDA images. | Atif Ikram Masita Abdul Jalil Amir Bin Ngah Nadeem Iqbal Nazri Kama Azri Azmi Ahmad Salman Khan Yasir Mahmood Assad Alzayed | 2022 | Computers, Materials & Continua2022，，11： | 0 |
| 19 | Septicemic Melioidosis:A Forensic Autopsy Case Report显示文摘We report a 27-year-old male from Kuwait who died due to melioidosis,and the diagnosis was achieved after the deceased underwent postmortem examination at the Forensic Department,Kuala Lumpur Hospital.While the disease is endemic in Southeast Asia and Northern Australia,human melioidosis infection has yet been reported in Kuwait.He was initially diagnosed as acute gastroenteritis at a private clinic before being found dead at a hotel in Kuala Lumpur.The autopsy revealed positive findings of Burkholderia pseudomallei in the deceased brain,lung,liver,and spleen as well as in the blood and cerebrospinal fluid culture.The deceased^death highlights the importance of early accurate diagnosis,the common manifestations,and the need of effective antibiotic treatment of septicemic melioidosis in high prevalent areas. | Atif Shamsudin Heo Chong Chin Ahmad Hafizam Hasmi Hapizah Mohd Nawawi | 2018 | Journal of Forensic Science and Medicine2018，4，4： | 0 |
| 20 | Quality of Service Aware Cluster Routing in Vehicular Ad Hoc Networks显示文摘In vehicular ad hoc networks(VANETs),the topology information(TI)is updated frequently due to vehicle mobility.These frequent changes in topology increase the topology maintenance overhead.To reduce the control message overhead,cluster-based routing schemes are proposed.In clusterbased routing schemes,the nodes are divided into different virtual groups,and each group(logical node)is considered a cluster.The topology changes are accommodated within each cluster,and broadcasting TI to the whole VANET is not required.The cluster head(CH)is responsible for managing the communication of a node with other nodes outside the cluster.However,transmitting real-time data via a CH may cause delays in VANETs.Such real-time data require quick service and should be routed through the shortest path when the quality of service(QoS)is required.This paper proposes a hybrid scheme which transmits time-critical data through the QoS shortest path and normal data through CHs.In this way,the real-time data are delivered efciently to the destination on time.Similarly,the routine data are transmitted through CHs to reduce the topology maintenance overhead.The work is validated through a series of simulations,and results show that the proposed scheme outperforms existing algorithms in terms of topology maintenance overhead,QoS and real-time and routine packet transmission. | Ishtiaq Wahid Fasee Ullah Masood Ahmad Atif Khan M.Irfan Uddin Abdullah Alharbi Wael Alosaimi | 2021 | Computers, Materials & Continua2021，，6： | 0 |
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