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| 1 | Mitogenomic phylogeny of the Asian colobine genus Trachypithecus with special focus on Trachypithecus phayrei(Blyth, 1847) and description of a new species显示文摘Trachypithecus,which currently contains 20 species divided into four groups,is the most speciose and geographically dispersed genus among Asian colobines.Despite several morphological and molecular studies,however,its evolutionary history and phylogeography remain poorly understood.Phayre’s langur(Trachypithecus phayrei) is one of the most widespread members of the genus,but details on its actual distribution and intraspecific taxonomy are limited and controversial.Thus,to elucidate the evolutionary history of Trachypithecus and to clarify the intraspecific taxonomy and distribution of T.phayrei,we sequenced 41 mitochondrial genomes from georeferenced fecal samples and museum specimens,including two holotypes.Phylogenetic analyses revealed a robustly supported phylogeny of Trachypithecus,suggesting that the T.pileatus group branched first,followed by the T.francoisi group,and the T.cristatus and T.obscurus groups most recently.The four species groups diverged from each other 4.5-3.1 million years ago(Ma),while speciation events within these groups occurred much more recently(1.6-0.3 Ma).Within T.phayrei,we found three clades that diverged 1.0-0.9 Ma,indicating the existence of three rather than two taxa.Following the phylogenetic species concept and based on genetic,morphological,and ecological differences,we elevate the T.phayrei subspecies to species level,describe a new species from central Myanmar,and refine the distribution of the three taxa.Overall,our study highlights the importance of museum specimens and provides new insights not only into the evolutionary history of T.phayrei but the entire Trachypithecus genus as well. | Christian Roos Kristofer MHelgen Roberto Portela Miguez Naw May Lay Thant Ngwe Lwin Aung Ko Lin Aung Lin Khin Mar Yi Paing Soe Zin Mar Hein Margaret Nyein Nyein Myint Tanvir Ahmed Dilip Chetry Melina Urh EGrace Veatch Neil Duncan Pepijn Kamminga Marcus AHChua Lu Yao Christian Matauschek Dirk Meyer Zhi-Jin Liu Ming Li Tilo Nadler Peng-Fei Fan Le Khac Quyet Michael Hofreiter Dietmar Zinner Frank Momberg | 2020 | Zoological Research2020,41,6: | 5 |
| 2 | Colours of do mestication显示文摘 | Cieslak M Reissmann M Hofreiter M | 2011 | Biological Reviews2011,86,4: | 1 |
| 3 | Paralleltagged sequencing on the 454 platform 显示文摘 | MEYER M STENZEL U HOFREITER M | 2008 | Nature Protocols2008,3,2: | 1 |
| 4 | Properties of periodate oxidized starch显示文摘 | Sloan J W Hofreiter B T Mellies R T | 1960 | Industrial and Engineering Chem1960,48,: | 1 |
| 5 | Genomic Sequencing of Pleistocene Cave Bears 显示文摘 | Noonan J P Hofreiter M Smith D | 2005 | Science2005,309,5734: | 1 |
| 6 | Rapid estimation of dialdehyde content of oxystarch through quantitative consumption 显示文摘 | Hofreiter B T Alexander B H Wolff I A | 1955 | Anal Chem1955,27,: | 1 |
| 7 | Rapid estimation of dialdehyde content of oxystarch through quantitative consumption 显示文摘 | B H Alexander Wolff I A | 1955 | Anal Chem1955,27,: | 1 |
| 8 | Colours of domestication 显示文摘 | CIESLAK M REISSMANN M HOFREITER M | 2011 | Biol Rev Camb Philos Soc2011,86,4: | 1 |
| 9 | Properties of periodate oxidized starch显示文摘 | B T Hofreiter R L Mellies | 1960 | Industrial and Engineering Chem1960,48,: | 1 |
| 10 | Ancient DNA显示文摘 | Hofreiter M Serre D Poinar NH | 2001 | Nat Genet Rev2001,2,: | 1 |
| 11 | The genetic and evolutionary basis of colour variation in vertebrates显示文摘 | Hofreiter M Schonberg T | | 0,,15: | 1 |
| 12 | A polysalt com- plex for wet-end addition 显示文摘 | Carr ME Hamerstrand G E Hofreiter B T | 1977 | TAPPI1977,60,12: | 1 |
| 13 | Properties of periodate oxidized starch显示文摘 | SLOAN J W HOFREITER B T MELLIES R T | 1956 | Industrial and Engineering Chem1956,48,7: | 1 |
| 14 | DNA sequences from multiple amplifications reveal artifacts induced by cytosine deamination in ancient DNA 显示文摘 | Hofreiter M Jaenicke V Serre D | 2001 | Nucleic Acids Res2001,29,: | 1 |
| 15 | A rapid column-based ancient DNA extraction method for increased samplethroughput显示文摘 | Nadin Rohland Heike Siedel Michael Hofreiter | 2010 | Molecular Ecology Resources2010,10,: | 1 |
| 16 | Properties of periodate oxidized starch显示文摘 | Sloan J W Hofreiter B T Mellies R L | 1956 | Ind Eng Chem1956,48,7: | 1 |
| 17 | A molecular analysis of ground sloth diet through the last glaciation显示文摘 | Hofreiter M Poinar HN Spaulding WG | 2000 | Mol Ecol2000,9,: | 1 |
| 18 | Rapid estimation of di aldehyde content of periodate oxystarch through quantitative aikali consumption显示文摘 | Hofreiter B T Alexander B H Wolff I A | 1957 | Anal Chem1957,27,12: | 1 |
| 19 | Colours of domes- tication显示文摘 | Cieslak M Reissmann M Hofreiter M | 2011 | Biol Rev Camb Philos Soc2011,86,4: | 1 |
| 20 | Wet strength in paper and paperboard显示文摘 | Hofreiter B J | 1965 | TAPPI Monograph Series1965,,29: | 1 |