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您的检索式：作者名="Melanie A.Whitmore"
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| 1 | Linkage between the intestinal microbiota and residual feed intake in broiler chickens显示文摘Background:Intestinal microbiota plays a key role in nutrient digestion and utilization with a profound impact on feed efficiency of livestock animals.However,the intestinal microbes that are critically involved in feed efficiency remain elusive.Methods:To identify intestinal bacteria associated with residual feed intake(RFI)in chickens,male Cobb broiler chicks were individually housed from day 14 to day 35.Individual RFI values were calculated for 56 chickens.Luminal contents were collected from the ileum,cecum,and cloaca of each animal on day 35.Bacterial DNA was isolated and subjected to 16S rRNA gene sequencing.Intestinal microbiota was classified to the feature level using Deblur and QIIME 2.High and low RFI groups were formed by selecting 15 and 17 chickens with the most extreme RFI values for subsequent LEfSe comparison of the difference in the microbiota.Spearman correlation analysis was further performed to identify correlations between the intestinal microbiota composition and RFI.Results:No significant difference in evenness,richness,and overall diversity of the microbiota in the ileum,cecum,or cloaca was observed between high and low RFI chickens.However,LEfSe analysis revealed a number of bacterial features being differentially enriched in either high or low RFI chickens.Spearman correlation analysis further identified many differentially enriched bacterial features to be significantly correlated with RFI(P<0.05).Importantly,not all short-chain fatty acid(SCFA)producers showed a positive association with RFI.While two novel members of Oscillibacter and Butyricicoccus were more abundant in low-RFI,high-efficiency chickens,several other SCFA producers such as Subdoligranulum variabile and two related Peptostreptococcaceae members were negatively associated with feed efficiency.Moreover,a few closely-related Lachnospiraceae family members showed a positive correlation with feed efficiency,while others of the same family displayed an opposite relationship.Conclusions:Our results highlight the complexity of the intestinal microbiota and a need to differentiate the bacteria to the species,subspecies,and even strain levels in order to reveal their true association with feed efficiency.Identification of RFI-associated bacteria provides important leads to manipulate the intestinal microbiota for improving production efficiency,profitability,and sustainability of poultry production. | Jing Liu Sydney N.Stewart Kelsy Robinson Qing Yang Wentao Lyu Melanie A.Whitmore Guolong Zhang | 2021 | Journal of Animal Science and Biotechnology2021，12，3： | 2 |
| 2 | Perturbations of the ileal mycobiota by necrotic enteritis in broiler chickens显示文摘Background:Intestinal microbiota is critical for maintaining animal health and homeostasis.However,involvement of the fungal community,also known as the mycobiota,in animal health and disease is poorly understood.This study was aimed to examine the association between the intestinal mycobiota and the severity of necrotic enteritis(NE),an economically significant poultry disease.Methods:A total of 90 day-of-hatch Cobb broilers were infected with Eimeria maxima on d 10,followed by an oral challenge with C.perfringens on d 14 to induce NE,while another 10 broilers were served as mock-infected controls.On d 17,the lesions in the jejunum were scored,and the ileal digesta were subjected to DNA isolation and real-time PCR quantification of total bacterial and fungi populations.Internal transcribed spacer 2(ITS2)amplicon sequencing was also performed to profile the ileal mycobiota composition.Changes in the ileal mycobiota in response to NE were investigated.Spearman correlation analysis was further conducted to identify the correlations between relative abundances of individual ileal fungi and the severity of NE.Results:While the total bacterial population in the ileum was increased by 2-to 3-fold in NE chickens,the total fungal population was progressively declined in more exacerbated NE,with the most severely infected chickens showing a nearly 50-fold reduction relative to mock-infected controls.Richness of the ileal mycobiota also tended to reduce in chickens with NE(P=0.06).Compositionally,among 30 most abundant fungal amplicon sequence variants(ASVs),11 were diminished and 7 were enriched(P<0.05),while 12 remained largely unchanged in NEafflicted chickens(P>0.05).Multiple Wallemia and Aspergillus species were markedly diminished in NE(P<0.05)and also showed a significant negative correlation with NE severity(P<0.05).Conclusions:Dysbiosis of the ileal mycobiota is induced evidently by NE and the extent of the dysbiosis is positively correlated with disease severity.These findings suggest a possible role of the intestinal mycobiota in NE pathogenesis and highlight the mycobiota as a new potential target for NE mitigation in poultry. | Qing Yang Jing Liu Kelsy J.Robinson Melanie A.Whitmore Sydney N.Stewart Guolong Zhang | 2022 | Journal of Animal Science and Biotechnology2022，13，2： | 0 |
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