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| 1 | Phased,chromosome-scale genome assemblies of tetraploid potato reveal a complex genome,transcriptome,and predicted proteome landscape underpinning genetic diversity显示文摘Cultivated potato is a clonally propagated autotetraploid species with a highly heterogeneous genome.Phased assemblies of six cultivars including two chromosome-scale phased genome assemblies revealed extensive allelic diversity,including altered coding and transcript sequences,preferential allele expression,and structural variation that collectively result in a highly complex transcriptome and predicted proteome,which are distributed across the homologous chromosomes.Wild species contribute to the extensive allelic diversity in tetraploid cultivars,demonstrating ancestral introgressions predating modern breeding efforts.As a clonally propagated autotetraploid that undergoes limited meiosis,dysfunctional and deleterious alleles are not purged in tetraploid potato.Nearly a quarter of the loci bore mutations are predicted to have a high negative impact on protein function,complicating breeder’s efforts to reduce genetic load.The StCDF1 locus controls maturity,and analysis of six tetraploid genomes revealed that 12 allelic variants of StCDF1 are correlated with maturity in a dosage-dependent manner.Knowledge of the complexity of the tetraploid potato genome with its rampant structural variation and embedded deleterious and dysfunctional alleles will be key not only to implementing precision breeding of tetraploid cultivars but also to the construction of homozygous,diploid potato germplasm containing favorable alleles to capitalize on heterosis in F1 hybrids. | Genevieve Hoopes Xiaoxi Meng John P.Hamilton Sai Reddy Achakkagari Fernanda de Alves Freitas Guesdes Marie E.Bolger Joseph J.Coombs Danny Esselink Natalie R.Kaiser Linda Kodde Maria Kyriakidou Brian Lavrijssen Natascha van Lieshout Rachel Shereda Heather K.Tuttle Brieanne Vaillancourt Joshua C.Wood Jan Mde Boer Nolan Bornowski Peter Bourke David Douches Herman Jvan Eck Dave Ellis Max J.Feldman Kyle M.Gardner Johannes C.P.Hopman Jiming Jiang Walter S.De Jong Joseph C.Kuhl Richard G.Novy Stan Oome Vidyasagar Sathuvalli Ek Han Tan Remco A.Ursum M.Isabel Vales Kelly Vining Richard G.F.Visser Jack Vossen G.Craig Yencho Noelle L.Anglin Christian W.B.Bachem Jeffrey B.Endelman Laura M.Shannon Martina V.Stromvik Helen H.Tai Bjorn Usadel C.Robin Buell Richard Finkers | 2022 | Molecular Plant2022，15，3： | 4 |
| 2 | The Soil-Borne Identity and Microbiome-Assisted Agriculture:Looking Back to the Future显示文摘Looking forward includes looking back every now and then.In 2007,David Weller looked back at 30 years of biocontrol of soil-borne pathogens by Pseudomonas and signified that the progress made over decades of research has provided a firm foundation to formulate current and future research questions.It has been recognized for more than a century that soil-borne microbes play a significant role in plant growth and health.The recent application of high-throughput omics technologies has enabled detailed dissection of the microbial players and molecular mechanisms involved in the complex interactions in plant-associated microbiomes.Here,we highlight old and emerging plant microbiome concepts related to plant disease control,and address perspectives that modern and emerging microbiomics technologies can bring to functionally characterize and exploit plant-associated microbiomes for the benefit of plant health in future microbiome-assisted agriculture. | Peter A.H.M.Bakker Roeland L.Berendsen Johan A.Van Pelt Gilles Vismans Ke Yu Erqin Li Sietske Van Bentum Sanne W.M.Poppeliers Juan J.Sanchez Gil Hao Zhang Pim Goossens Ioannis A.Stringlis Yang Song Ronnie de Jonge CornéM.J.Pieterse | 2020 | Molecular Plant2020，13，10： | 3 |
| 3 | Anxiety and Risk of Incident Coronary Heart Disease显示文摘 | Annelieke M. Roest Elisabeth J. Martens Peter de Jonge Johan Denollet | 2010 | Journal of the American College of Cardiology2010，，1： | 3 |
| 4 | The association between neuroticism and self-reported common somatic symptoms in a population cohort显示文摘 | Judith G.M. Rosmalen Jan Neeleman Reinold O.B. Gans Peter de Jonge | 2007 | Journal of Psychosomatic Research2007，，3： | 2 |
| 5 | Investor relations, reputational bonding, and corporate governance:The case of Royal Ahold显示文摘 | Abe de Jong DeJong Douglas V Mertens Gerard and Roosenboom Peter | 2007 | Journal of Accounting and Public Policy2007，26，3： | 1 |
| 6 | State of FAIRness in ESFRI Projects显示文摘Since 2009 initiatives that were selected for the roadmap of the European Strategy Forum on Research Infrastructures started working to build research infrastructures for a wide range of research disciplines.An important result of the strategic discussions was that distributed infrastructure scenarios were now seen as“complex research facilities”in addition to,for example traditional centralised infrastructures such as CERN.In this paper we look at five typical examples of such distributed infrastructures where many researchers working in different centres are contributing data,tools/services and knowledge and where the major task of the research infrastructure initiative is to create a virtually integrated suite of resources allowing researchers to carry out state-of-the-art research.Careful analysis shows that most of these research infrastructures worked on the Findability,Accessibility,Interoperability and Reusability dimensions before the term“FAIR”was actually coined.The definition of the FAIR principles and their wide acceptance can be seen as a confirmation of what these initiatives were doing and it gives new impulse to close still existing gaps.These initiatives also seem to be ready to take up the next steps which will emerge from the definition of FAIR maturity indicators.Experts from these infrastructures should bring in their 10-years’experience in this definition process. | Peter Wittenburg Franciska de Jong Dieter van Uytvanck Massimo Cocco Keith Jeffery Michael Lautenschlager Hannes Thiemann Margareta Hellstrom Ari Asmi Petr Holub | 2020 | Data Intelligence2020，2，1： | 1 |
| 7 | Acoustic modeling of shell-encapsulated gas bubbles 显示文摘 | Peter J Friking A Nico de Jong | 1998 | Ultrasound in Medicine and Biology1998，24，4： | 1 |
| 8 | Horizontal and vertical communication as determinants of professional and organisational identification显示文摘 | Jos Bartels Oscar Peters Menno de Jong Ad Pruyn Marjolijn van der Molen | 2010 | Personnel Review2010，，2： | 1 |
| 9 | Detection procedues of ultrasound contrast agents 显示文摘 | Nico de Jong Peter JA Frinking | 2000 | Ultrasonics2000，38，1： | 1 |
| 10 | The promoter terminator of chrysanthemum rbcS1 directs very high ex- pression levels in plants 显示文摘 | Outchkourov N S Peters J de Jong J | 2003 | Planta2003，216，： | 1 |
| 11 | Horizontal and vertical communication as determinants of professional and organizational identification显示文摘 | Bartels J Peters O De Jong M | | 0，，02： | 1 |
| 12 | Detectingmedical problems, a survey of 4 087 patients in the Netherlands显示文摘 | de Jong KJM Oosting J Peters GJM | 1991 | Eur JMed1991，1，1： | 1 |
| 13 | RIVER BED DYNAMICS AND BED SEDIMENT TRANSPORTIN MOUNTAIN TORRENTS IN MOUNTAIN TORRENTS显示文摘Undoubtfully there is a strong interrelationship between sediment transport and river bed dynamics. Instable river beds are the result and the reason for erosion, transport and for accumulation of bed sediments. Since the investigations of Simons & Richardson (1962) the interpretation on flow regime, bed roughness and resistance to flow is well investigated for Sandy bed material. In contrast there is a certain neglect of knowledge in the case of coarser material. The big difference between these river beds are caused by the distinctive erodibility of the coarse materials and their restricted availability. Nevertheless the regime concept is a good tool not only for the classification of many phenomena but will help to understand the dynamics of both river beds and transports of mountain torrents. | Peter Ergenzinger Carmen de Jong Berlin Environmental Research Group Institut fur Geographische Wissenschaften Freie Universitut Berlin Grunewaldstr. 35, 12165 Berlin, Germany | 1997 | International Journal of Sediment Research1997，12，3： | 1 |
| 14 | Role of Helicobacter pylori eradication in high-grade MALT lymphoma显示文摘 | Henk Boot Daphne de Jong Peter van Heerde Babs Taal | 1995 | The Lancet1995，，8972： | 1 |
| 15 | Clinical, epidemiological and virological features of dengue virus infections in vietnamese patients presenting to primary care facilities with acute undifferentiated fever显示文摘 | Khoa T.D. Thai Hoang Lan Phuong Tran Thi Thanh Nga Phan Trong Giao Le Quoc Hung Nguyen Van Nam Tran Quang Binh Cameron Simmons Jeremy Farrar Tran Thinh Hien H. Rogier van Doorn Menno D. de Jong Peter J. de Vries | 2010 | Journal of Infection2010，，： | 1 |
| 16 | Influence of High- Intensity Ultrasound and Heat Treatment in Continuous Flow on Fat, Proteins, and Native Enzymes of Milk 显示文摘 | Mar Villamiel Peter de Jong | 2000 | Agric Food Chem2000，48，： | 1 |
| 17 | A controlled trial of methylphenidate in adults with attention deficit/hyperactivity disorder and substance misuse disorders 显示文摘 | Peter J Carpentier Cor A J De Jong Boukje A G Dijkstra | 2005 | Addiction2005，100，12： | 1 |
| 18 | Internalizing Behaviors Among Kindergarten Children: Measuring Dimensions of Social Withdrawal With a Checklist显示文摘 | Jochem T. Thijs Helma M. Y. Koomen Peter F. de Jong Aryan van der Leij Mirella G. P. van Leeuwen | 2004 | Journal of Clinical Child & Adolescent Psychology2004，，4： | 1 |
| 19 | Influence of High- Intensity Ultrasound and Heat Treatment in Contiuous Flow on Fat, Proteins, and Native Enzymes of Milk 显示文摘 | Mar Villamie Peter de jong | 2000 | Agric Food Chem2000，48，： | 1 |
| 20 | Optimized bacterial production of nonglycosylated human transferrin and its half-molecules显示文摘 | Maarten H. de Smit Peter Hoefkens Gerard de Jong Jan van Duin Peter H. van Knippenberg Hendrik G. van Eijk | 1995 | International Journal of Biochemistry and Cell Biology1995，，8： | 1 |
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