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| 1 | Multi-focus image fusion based on block matching in 3D transform domain显示文摘Fusion methods based on multi-scale transforms have become the mainstream of the pixel-level image fusion. However,most of these methods cannot fully exploit spatial domain information of source images, which lead to the degradation of image.This paper presents a fusion framework based on block-matching and 3D(BM3D) multi-scale transform. The algorithm first divides the image into different blocks and groups these 2D image blocks into 3D arrays by their similarity. Then it uses a 3D transform which consists of a 2D multi-scale and a 1D transform to transfer the arrays into transform coefficients, and then the obtained low-and high-coefficients are fused by different fusion rules. The final fused image is obtained from a series of fused 3D image block groups after the inverse transform by using an aggregation process. In the experimental part, we comparatively analyze some existing algorithms and the using of different transforms, e.g. non-subsampled Contourlet transform(NSCT), non-subsampled Shearlet transform(NSST), in the 3D transform step. Experimental results show that the proposed fusion framework can not only improve subjective visual effect, but also obtain better objective evaluation criteria than state-of-the-art methods. | YANG Dongsheng HU Shaohai LIU Shuaiqi MA Xiaole SUN Yuchao | 2018 | Journal of Systems Engineering and Electronics2018，29，2： | 5 |
| 2 | A high-quality genome assembly of Morinda officinalis,a famous native southern herb in the Lingnan region of southern China显示文摘Morinda officinalis is a well-known medicinal and edible plant that is widely cultivated in the Lingnan region of southern China.Its dried roots(called bajitian in traditional Chinese medicine)are broadly used to treat various diseases,such as impotence and rheumatism.Here,we report a high-quality chromosome-scale genome assembly of M.officinalis using Nanopore single-molecule sequencing and Hi-C technology.The assembled genome size was 484.85Mb with a scaffold N50 of 40.97 Mb,and 90.77%of the assembled sequences were anchored on eleven pseudochromosomes.The genome includes 27,698 protein-coding genes,and most of the assemblies are repetitive sequences.Genome evolution analysis revealed that M.officinalis underwent core eudicotγgenome triplication events but no recent whole-genome duplication(WGD).Likewise,comparative genomic analysis showed no large-scale structural variation after species divergence between M.officinalis and Coffea canephora.Moreover,gene family analysis indicated that gene families associated with plant–pathogen interactions and sugar metabolism were significantly expanded in M.officinalis.Furthermore,we identified many candidate genes involved in the biosynthesis of major active components such as anthraquinones,iridoids and polysaccharides.In addition,we also found that the DHQS,GGPPS,TPS-Clin,TPS04,sacA,and UGDH gene families—which include the critical genes for active component biosynthesis—were expanded in M.officinalis.This study provides a valuable resource for understanding M.officinalis genome evolution and active component biosynthesis.This work will facilitate genetic improvement and molecular breeding of this commercially important plant. | Jihua Wang Shiqiang Xu Yu Mei Shike Cai Yan Gu Minyang Sun Zhan Liang Yong Xiao Muqing Zhang Shaohai Yang | 2021 | Horticulture Research2021，8，1： | 4 |
| 3 | Gap-free genome assembly and comparative analysis reveal the evolution and anthocyanin accumulation mechanism of Rhodomyrtus tomentosa显示文摘Rhodomyrtus tomentosa is an important f leshy-fruited tree and a well-known medicinal plant of the Myrtaceae family that is widely cultivated in tropical and subtropical areas of the world.However,studies on the evolution and genomic breeding of R.tomentosa were hindered by the lack of a reference genome.Here,we presented a chromosome-level gap-free T2T genome assembly of R.tomentosa using PacBio and ONT long read sequencing.We assembled the genome with size of 470.35 Mb and contig N50 of∼43.80 Mb with 11 pseudochromosomes.A total of 33382 genes and 239.31 Mb of repetitive sequences were annotated in this genome.Phylogenetic analysis elucidated the independent evolution of R.tomentosa starting from 14.37MYA and shared a recent WGD event with other Myrtaceae species.We identified four major compounds of anthocyanins and their synthetic pathways in R.tomentosa.Comparative genomic and gene expression analysis suggested the coloring and high anthocyanin accumulation in R.tomentosa tends to be determined by the activation of anthocyanin synthesis pathway.The positive selection and up-regulation of MYB transcription factors were the implicit factors in this process.The copy number increase of downstream anthocyanin transport-related OMT and GST gene were also detected in R.tomentosa.Expression analysis and pathway identification enriched the importance of starch degradation,response to stimuli,effect of hormones,and cell wall metabolism during the f leshy fruit development in Myrtaceae.Our genome assembly provided a foundation for investigating the origins and differentiation of Myrtaceae species and accelerated the genetic improvement of R.tomentosa. | angping Li Shiqiang Xu Zitong Xiao Jingming Wang Yu Mei Haifei Hu Jingyu Li Jieying Liu Zhuangwei Hou Junliang Zhao Shaohai Yang Jihua Wang | 2023 | Horticulture Research2023，10，3： | 3 |
| 4 | Image separation using wavelet-complex shearlet dictionary显示文摘This paper presents a new method for image separation through employing a combined dictionary consisting of wavelets and complex shearlets. Because the combined dictionary sparsely represents points and curvilinear singularities respectively, the image can be decomposed into pointlike and curvelike parts as accurate as possible. The proposed method based on the geometric separation theory introduced by Donoho in 2005 shows that accurate geometric separation of the morphologically distinct features of points and curves can be achieved by l1 minimization. The experimental results show that the proposed method can not only be effective but also greatly reduce the computing time. | Shuaiqi Liu Shaohai Hu Yang Xiao | 2014 | Journal of Systems Engineering and Electronics2014，25，2： | 2 |
| 5 | 3D motion and geometric information system of single-antenna radar based on incomplete 1D range data显示文摘A 3D motion and geometric information system of single-antenna radar is proposed,which can be supported by spotlight synthetic aperture radar(SAR) system and inverse SAR(ISAR) system involving relative 3D motion of the rigid target.In this system,applying the geometry invariance of the rigid target,the unknown 3D shape and motion of the radar target can be reconstructed from the 1D range data of some scatterers extracted from the high-resolution range image.Compared with the current 1D-to-3D algorithm,in the proposed algorithm,the requirement of the 1D range data is expanded to incomplete formation involving large angular motion of the target and hence,the quantity of the scatterers and the abundance of 3D motion are enriched.Furthermore,with the three selected affine coordinates fixed,the multi-solution problem of the reconstruction is solved and the technique of nonlinear optimization can be successfully utilized in the system.Two simulations are implemented which verify the higher robustness of the system and the better performance of the 3D reconstruction for the radar target with unknown relative motion. | Yingkang Zhang Yang Xiao Shaohai Hu | 2011 | Journal of Systems Engineering and Electronics2011，22，3： | 1 |
| 6 | Metabolic profiles and morphological characteristics of leaf tips among different sweet potato(Ipomoea batatas Lam.)varieties显示文摘Sweet potato leaf tips have high nutritional value,and exploring the differences in the metabolic profiles of leaf tips among different sweet potato varieties can provide information to improve their qualities.In this study,a UPLC-Q-Exactive Orbitrap/MS-based untargeted metabolomics method was used to evaluate the metabolites in leaf tips of 32 sweet potato varieties.Three varieties with distinct overall metabolic profiles(A01,A02,and A03),two varieties with distinct profiles of phenolic acids(A20 and A18),and three varieties with distinct profiles of flavonoids(A05,A12,and A16)were identified.In addition,a total of 163 and 29 differentially expressed metabolites correlated with the color and leaf shape of sweet potato leaf tips,respectively,were identified through morphological characterization.Group comparison analysis of the phenotypic traits and a metabolite-phenotypic trait correlation analysis indicated that the color differences of sweet potato leaf tips were markedly associated with flavonoids.Also,the level of polyphenols was correlated with the leaf shape of sweet potato leaf tips,with lobed leaf types having higher levels of polyphenols than the entire leaf types.The findings on the metabolic profiles and differentially expressed metabolites associated with the morphology of sweet potato leaf tips can provide useful information for breeding sweet potato varieties with higher nutritional value. | Wenqing Tan Xinbo Guo Zhangying Wang Rong Zhang Chaochen Tang Bingzhi Jiang Ruixue Jia Yuanyuan Deng Shaohai Yang Jingyi Chen | 2024 | Journal of Integrative Agriculture2024，23，2： | 0 |
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