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| 1 | Towards a unified paradigm for sequence‐based identification of fungi显示文摘 | Urmas K?ljalg R. Henrik Nilsson Kessy Abarenkov Leho Tedersoo Andy F. S. Taylor Mohammad Bahram Scott T. Bates Thomas D. Bruns Johan Bengtsson‐Palme Tony M. Callaghan Brian Douglas Tiia Drenkhan Ursula Eberhardt Margarita Due?as Tine Grebenc Gareth W. Gri | 2013 | Mol Ecol2013，，21： | 2 |
| 2 | Identifying the ‘unidentified’ fungi: a global-scale long-read third-generation sequencing approach显示文摘Molecular identification methods,in particular high-throughput sequencing tools,have greatly improved our knowledge about fungal diversity and biogeography,but many of the recovered taxa from natural environments cannot be identified to species or even higher taxonomic levels.This study addresses the phylogenetic placement of previously unrecognized fungal groups by using two complementary approaches:(i)third-generation amplicon sequencing analysis of DNA from global soil samples,screening out ITS reads of<90%similarity to other available Sanger sequences,and(ii)analysis of common fungal taxa that were previously indicated to be enigmatic in terms of taxonomic placement based on the ITS sequences alone(so-called top50 sequences).For the global soil samples,we chose to amplify the full rRNA gene operon using four partly overlapping amplicons and multiple newly developed primers or primer combinations that cover nearly all fungi and a vast majority of non-fungal eukaryotes.We extracted the rRNA 18S(SSU)and 28S(LSU)genes and performed phylogenetic analyses against carefully selected reference material.Both SSU and LSU analyses placed most soil sequences and top50 sequences to known orders and classes,but tens of monophyletic groups and single sequences remained outside described taxa.Furthermore,the LSU analyses recovered a few small groups of sequences that may potentially represent novel phyla.We conclude that rRNA genes-based phylogenetic analyses are efficient tools for determining phylogenetic relationships of fungal taxa that cannot be placed to any order or class using ITS sequences alone.However,in many instances,longer rRNA gene sequences and availability of both SSU and LSU reads are needed to improve taxonomic resolution.By leveraging third-generation sequencing from global soil samples,we successfully provided phylogenetic placement for many previously unidentified sequences and broadened our view on the fungal tree of life,with 10-20%new order-level taxa.In addition,the PacBio sequence data greatly extends fungal class-level information in reference databases. | Leho Tedersoo Sten Anslan Mohammad Bahram Urmas Kõljalg Kessy Abarenkov | 2020 | Fungal Diversity2020，，4： | 2 |
| 3 | Chaos in oil prices? Evidence from futures markets显示文摘 | Bahram A Arjun C Kanwalroop K D | 2001 | Energy Economics2001，23，5： | 1 |
| 4 | Temperature-dependent aminoglycoside resistance in Stenotrophomonas (Xanthomonas) maltophilia:alterations in protein and lipopolysaccharide with growth temperature显示文摘 | RAHMATI BAHRAM A MAGEE J T JACKSON S K | 1996 | J Antimicrob Chemother1996，37，4： | 1 |
| 5 | Detection of human papillomavirus type 16 and 18 in pathologic samples from patients with cervical cancer by PCR and RFLP methods 显示文摘 | Parviz M Mohammad R Bahram K | 2006 | DARU2006，14，2： | 1 |
| 6 | Hypoxia-inducible factor1α is essential for cell cycle arrest during hypoxia 显示文摘 | NOBUHITO G HEATHER ER BAHRAM K | 2003 | Mol Cell Biol2003，23，1： | 1 |
| 7 | A Novel Image Steganogra- phy Scheme with High Embedding Capacity and Tunable Vi- sual Image Quality Based on a Genetic Algorithm显示文摘 | HAMIDREZA R K BAHRAM N | 2014 | Expert Systems with Applications2014，41，14： | 1 |
| 8 | Serial time-encoded amplified imaging for real-time observation of fast dynamic phenomena显示文摘 | Keisuke G Tsia K Bahram J | 2009 | Nature2009，458，7242： | 1 |
| 9 | The scientific history of hydrocephalus and its treatment显示文摘 | Alfred A Paul K Bahram H | 1999 | Neurosurg Rev1999，22，： | 1 |
| 10 | Developing monthly ope- rating rules for a cascade system of reservoirs application of Bayesian networks显示文摘 | BAHRAM M REZA K BANAFSHEH Z | 2009 | Environmental Modeling & Software2009，24，12： | 1 |
| 11 | Relationship between workplace spirituality and organizational citizenship behavior among nurses through mediation of affective organizational commitment 显示文摘 | FARAHNAZ K SALMIAH M A BAHRAM P | 2012 | Nursing Scholarship2012，，3： | 1 |
| 12 | Decen- tralized adaptive control of large-scale affine and nonaffine nonlinear systems显示文摘 | BAHRAM K MOHAMMAD B M MASOUD K G | 2009 | IEEE Transactions on Instrumentation and Measurement2009，58，8： | 1 |
| 13 | Using Neural Network and Genetic Algorithm to Enhance Performance in an Electronic Nose显示文摘 | Bahram Ghaffarzadeh K | 1999 | IEEE Transactions on Biomedical Engineering1999，46，4： | 1 |
| 14 | The scientific history of hyd- rocephalus and its treatment显示文摘 | Alfred A Paul K Bahram H | 1999 | Neuresurg Rey1999，22，： | 1 |
| 15 | Multi-objective optimization approach to optimize vehicle ride and handling character显示文摘 | Mehrdad N K Bahram N Golamhassan P | 2010 | World Academy of Science Engineering and Technology2010，38，10： | 1 |
| 16 | FungalTraits:a user-friendly traits database of fungi and fungus-like stramenopiles显示文摘The cryptic lifestyle of most fungi necessitates molecular identification of the guild in environmental studies.Over the past decades,rapid development and affordability of molecular tools have tremendously improved insights of the fungal diversity in all ecosystems and habitats.Yet,in spite of the progress of molecular methods,knowledge about functional properties of the fungal taxa is vague and interpretation of environmental studies in an ecologically meaningful manner remains challenging.In order to facilitate functional assignments and ecological interpretation of environmental studies we introduce a user friendly traits and character database FungalTraits operating at genus and species hypothesis levels.Combining the information from previous efforts such as FUNGuild and FunFun together with involvement of expert knowledge,we reannotated 10,210 and 151 fungal and Stramenopila genera,respectively.This resulted in a stand-alone spreadsheet dataset covering 17 lifestyle related traits of fungal and Stramenopila genera,designed for rapid functional assignments of environmental stud-ies.In order to assign the trait states to fungal species hypotheses,the scientific community of experts manually categorised and assigned available trait information to 697,413 fungal ITS sequences.On the basis of those sequences we were able to summarise trait and host information into 92,623 fungal species hypotheses at 1%dissimilarity threshold. | Sergei Põlme Kessy Abarenkov RHenrik Nilsson Björn D.Lindahl Karina Engelbrecht Clemmensen Havard Kauserud Nhu Nguyen Rasmus Kjøller Scott T.Bates Petr Baldrian Tobias Guldberg Frøslev Kristjan Adojaan Alfredo Vizzini Ave Suija Donald Pfister Hans-Otto Baral Helle Järv Hugo Madrid Jenni Nordén Jian-Kui Liu Julia Pawlowska Kadri Põldmaa Kadri Pärtel Kadri Runnel Karen Hansen Karl-Henrik Larsson Kevin David Hyde Marcelo Sandoval-Denis Matthew E.Smith Merje Toome-Heller Nalin N.Wijayawardene Nelson Menolli Jr Nicole K.Reynolds Rein Drenkhan Sajeewa S.N.Maharachchikumbura Tatiana B.Gibertoni Thomas Læssøe William Davis Yuri Tokarev Adriana Corrales Adriene Mayra Soares Ahto Agan Alexandre Reis Machado Andrés Argüelles-Moyao Andrew Detheridge Angelina de Meiras-Ottoni Annemieke Verbeken Arun Kumar Dutta Bao-Kai Cui C.K.Pradeep César Marín Daniel Stanton Daniyal Gohar Dhanushka N.Wanasinghe Eveli Otsing Farzad Aslani Gareth W.Griffith Thorsten H.Lumbsch Hans-Peter Grossart Hossein Masigol Ina Timling Inga Hiiesalu Jane Oja John Y.Kupagme József Geml Julieta Alvarez-Manjarrez Kai Ilves Kaire Loit Kalev Adamson Kazuhide Nara Kati Küngas Keilor Rojas-Jimenez Krišs Bitenieks Laszlo Irinyi LászlóGNagy Liina Soonvald Li-Wei Zhou Lysett Wagner M.Catherine Aime MaarjaÖpik María Isabel Mujica Martin Metsoja Martin Ryberg Martti Vasar Masao Murata Matthew PNelsen Michelle Cleary Milan C.Samarakoon Mingkwan Doilom Mohammad Bahram Niloufar Hagh-Doust Olesya Dulya Peter Johnston Petr Kohout Qian Chen Qing Tian Rajasree Nandi Rasekh Amiri Rekhani Hansika Perera Renata dos Santos Chikowski Renato L.Mendes-Alvarenga Roberto Garibay-Orijel Robin Gielen Rungtiwa Phookamsak Ruvishika S.Jayawardena Saleh Rahimlou Samantha C.Karunarathna Saowaluck Tibpromma Shawn P.Brown Siim-Kaarel Sepp Sunil Mundra Zhu-Hua Luo Tanay Bose Tanel Vahter Tarquin Netherway Teng Yang Tom May Torda Varga Wei Li Victor Rafael Matos Coimbra Virton Rodrigo Targino de Oliveira Vitor Xavier de Lima Vladimir S.Mikryukov Yongzhong Lu Yosuke Matsuda Yumiko Miyamoto Urmas Kõljalg Leho Tedersoo | 2020 | Fungal Diversity2020，，6： | 1 |
| 17 | The scientific history of hydrocephalus and its treatment 显示文摘 | Alfred A Paul K Bahram H | 1999 | Neurosurg Rev1999，22，1： | 1 |
| 18 | The scientific history of hydrocephalus and its treatment 显示文摘 | Alfred A Paul K Bahram H | 1999 | Neurosurgical Review1999，22，23： | 1 |
| 19 | Correlation between distal motor latency and compound muscle action potential in amyotrophic lateral sclerosis 显示文摘 | Bahram M Klaus K Katja K | 2007 | Neurological Res2007，29，5： | 1 |
| 20 | Chaos in oil prices? evidence from futures markets显示文摘 | Bahram A Arjun C Kanwalroop K D | 2001 | Energy Eeonomics2001，23，4： | 1 |
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