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| 1 | A draft sequence of the rice (Oryza sativa ssp. indica) genome显示文摘The sequence of the rice genome holds fundamental information for its biology, including physiology, genetics, development, and evolution, as well as information on many beneficial phenotypes of economic significance. Using a 'whole genome shotgun' approach, we have pro-duced a draft rice genome sequence of Oryza sativa ssp. in-dica, the major crop rice subspecies in China and many other regions of Asia. The draft genome sequence is constructed from over 4.3 million successful sequencing traces with an accumulative total length of 2214.9 Mb. The initial assembly of the non-redundant sequences reached 409.76 Mb in length, based on 3.30 million successful sequencing traces with a total length of 1797.4 Mb from an indica variant cultivar 93-11, giving an estimated coverage of 95.29% of the rice genome with an average base accuracy of higher than 99%. The coverage of the draft sequence, the randomness of the sequence distribution, and the consistency of BIG-ASSEM-BLER, a custom-designed software package | YU Jun, HU Songnian, WANG Jun,LI Songgang WONG Ka-Shu Gane, LIU Bin,DENG Yajun, DAI Li, ZHOU Yan,ZHANG Xiuqing, CAO Mengliang, LIU Jing,SUN Jiandong , TANG Jiabin, CHEN Yanjiong,HUANG Xiaobing, LIN Wei, YE Chen, TONG Wei,CONG Lijuan, GENG Jianing, HAN Yujun, LI Lin,LI Wei, HU Guangqiang, HUANG Xiangang,LI Wenjie, LI Jian, LIU Zhanwei, LI Long,LIU Jianping, Ql Qiuhui, LIU Jinsong, LI Li,WANG Xuegang, LU Hong, WU Tingling,ZHU Miao, Nl Peixiang, HAN Hua, DONG Wei,REN Xiaoyu, FENG Xiaoli, GUI Peng,LI Xianran, WANG Hao, XU Xin, ZHAI Wenxue,XU Zhao, ZHANG Jinsong, HE Sijie,ZHANG Jianguo, XU Jichen, ZHANG Kunlin,ZHENG Xianwu, DONG Jianhai, ZENG Wanyong,TAO Lin, CHEN Xuewei, HE Jun, LIU Daofeng,TIAN Wei, TIAN Chaoguang, XIA Hongai,LI Gang, GAO Hui, LI Ping, CHEN Wei ,WANG Xudong, ZHANG Yong, HU Jianfei,WANG Jing, LIU Song, YANG Jian,ZHANG Guangyu, XIONG Yuqing, LI Zhijie,MAO Long, ZHOU Chengshu, ZHU Zhen,CHEN Runsheng, HAO Bailin,ZHENG Weimou, CHEN Shouyi, QUO Wei,LI Guojie, LIU Siqi, HUANG Guyang,TAO Ming, WANG Jian, ZHU Lihuang,YUAN Longping& YANG HuanmingBeijing Genomics Institute/Center of Genomics & Bioinformatics, Chinese Academy of Sciences, Beijing 101300, China Hangzhou Genomics Institute/Institute of Bioinformatics of Zhejiang University/Key Laboratory of Bioinformatics of Zhejiang Province, Hangzhou 310007, China Institute of Genetics, Chinese Academy of Sciences, Beijing 100101, China National Hybrid Rice R & D Center, Changsha 410125, China Laboratory of Bioinformatics, Institute of Biophysics, Chinese Academy of Sciences, Beijing 100101, China College of Life Sciences, Peking University, Beijing 100871, China Institute of Theoretical Physics, Chinese Academy of Sciences, Beijing 1Q0080, China Digital China Ltd., Beijing 100080, China Institute of Computing Technology, Chinese Academy of Sciences, Beijing 100080, China Medical College, Xi’an Jiaotong University, Xi’an 710061, ChinaThese authors contributed equally to this work.Corresponding author.Corresponden | 2001 | Chinese Science Bulletin2001，46，23： | 6 |
| 2 | Directed migration of neuronal precursors into the ischemic cerebral cortex and striatum显示文摘 | Kunlin Jin Yunjuan Sun Lin Xie Alyson Peel Xiao Ou Mao Sophie Batteur David A Greenberg | 2003 | Molecular and Cellular Neuroscience2003，，1： | 1 |
| 3 | Greenberg neuroglobin protects against nitric oxide toxicity显示文摘 | Kunlin J Xiao OM Lin X | 2008 | Neuroscience Letters2008，430，2： | 1 |
| 4 | A Modified Suture Technique for Transperitoneal Laparoscopic Dismembered Pyeloplasty of Pelvi-ureteric Junction Obstruction显示文摘 | Kunlin Yang Lin Yao Xuesong Li Cuijian Zhang Tianyu Wang Lei Zhang Dong Fang Zhisong He Liqun Zhou | 2014 | Urology2014，，： | 1 |
| 5 | VEGF-induced neuroprotection,neurogenesis,and angiogenesis after focal cerebral ischemia显示文摘 | Yunjuan S Kunlin J Lin X et a1 | 2003 | J Clin Invest2003，111，： | 1 |
| 6 | Hypoxia-inducible factor-1 and neuroglobin expression显示文摘 | Bryan Haines Marco Demaria Xiao Mao Lin Xie Judith Campisi Kunlin Jin David A. Greenberg | 2012 | Neuroscience Letters2012，，2： | 1 |
| 7 | VEGF-induced neuroprotection, neurogenesis, and angiogenesis after focal cerebral ischemia显示文摘 | Yunjuan S Kunlin J Lin X | 2003 | J Clin Invest2003，111，11： | 1 |
| 8 | Controlled Synthesis and Growth of Perfect Platinum Nanocubes Using a Pair of Low-Resistivity Fastened Silicon Wafers and Their Electrocatalytic Properties显示文摘有高密度的完美的铂(磅) nanocubes 被 hexachloroplatinic 酸的控制减小面对 H2SO4 和 HCl 综合了,采用一双低抵抗力的系住的硅(FS ) 在房间温度的晶片。添加剂的存在收费(由移开任何 SiO2 层的与 HF 的硅表面的优先的蚀刻导致了) 在 FS 的接口之间,表面导致高费用密度并且经由无电的 plating 便于磅 nanoparticles 的快免职。水的答案的费用密度,激动人心的时间,和同质影响了磅 nanoparticles 的几何形状。参数细微地被调节以便控制成核和生长率并且获得完美的磅 nanocubes。完美的磅 nanocubes 是与水晶的单身者暴露 { 100 } 方面。每相等的磅表面区域,磅 nanocubes 显示出的完成式为液体的 electrooxidation 相对截断的磅 nanocubes 或球形的磅 nanoparticles 提高了催化活动喂象甲醇和乙醇那样的燃料。而且,在那里,强壮的关联在应该导致这些材料的许多工艺的应用的完美的磅 nanocubes 的光、电、热、磁性、催化的性质之间被观察。 | Jitendra N. Tiwari Rajanish N. Tiwari Kunlin Lin | 2011 | Nano Research2011，4，6： | 1 |
| 9 | A modified suture technique for transperitoneal laparoscopic dismembered pyeloplasty of pelviureteric junction obstruction显示文摘 | Yang Kunlin Yao Lin Li Xuesong et at | 2015 | Urology2015，76，1： | 1 |
| 10 | VEGF-induced neuroprotection,neurogenesis,and angiogenesis after focal cerebral ischemia显示文摘 | Yunjuan Sun Kunlin Jin Lin Xie | 2003 | Clin Invest2003，111，12： | 1 |
| 11 | Enhanced neurogenesis in Alzheimer' s disease transgenic (PDGF- APPSw,Ind) mice显示文摘 | Kunlin Jin Veronica Galvan Lin Xie | 2004 | Proc Natl Acad Sci U S A2004，101，13： | 1 |
| 12 | Two-phase sub population genetic for parallel machine-scheduling problem显示文摘 | Chang P C Chen S H Lin Kunlin | 2005 | Expert System with Applications2005，29，3： | 1 |
| 13 | Direct somatic embryogenesis and related gene expression networks in leaf explants of Hippeastrum ‘Bangkok Rose’显示文摘Hippeastrum, a highly diverse genus in the Amaryllidaceae family, is a valuable ornamental bulbous flowering plant. Somatic embryogenesis(SE) is an efficient method for mass production of Hippeastrum plantlets. Previous studies have been devoted to the in vitro propagation of Hippeastrum, but the SE and its regulatory networks are rarely reported. In this study, we established a direct SE method of Hippeastrum Bangkok Rose' using leaf bases as explants. MS supplemented with 1.00 mg·L^(-1)NAA +1.00 mg·L^(-1)KT + 0.25 mg·L^(-1)TDZ was the optimal medium for SE. Histological observations showed that the bipolar somatic embryo originated from the epidermal cell layer and underwent initiation,globular, scutellar and coleoptile stages. During SE, endogenous hormones of IAA, CTK, ABA, and SA were highly accumulated. Transcriptomic analysis revealed the genes encoding auxin biosynthesis/metabolic enzymes and efflux carriers were induced, while the auxin receptor of TIR1 and ARF transcriptional repressor of Aux/IAA were down-regulated and up-regulated, respectively, leading to suppression of auxin signaling. In contrast, cytokine signaling was promoted at the early stage of SE, as biosynthesis, transport, and signaling components were up-regulated.Various stress-related genes were up-regulated at the early or late stages of SE. Chromatin remodeling could also be dynamically regulated via distinct expression enzymes that control histone methylation and acetylation during SE. Moreover, key SE regulators, including WOXs and SERKs were highly expressed along with SE. Overall, the present study provides insights into the SE regulatory mechanisms of the Hippeastrum. | Jingjue Zeng Yi Deng Shahid Iqbal Jiarui Zhang Kunlin Wu Guohua Ma Lin Li Guangyi Dai Rufang Deng Lin Fang Songjun Zeng | 2024 | Horticultural Plant Journal2024，10，2： | 0 |
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