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| 1 | Angiogenesis and neuronal remodeling after ischemic stroke显示文摘Increased microvessel density in the peri-infarct region has been reported and has been correlated with longer survival times in ischemic stroke patients and has improved outcomes in ischemic animal models.This raises the possibility that enhancement of angiogenesis is one of the strategies to facilitate functional recovery after ischemic stroke.Blood vessels and neuronal cells communicate with each other using various mediators and contribute to the pathophysiology of cerebral ischemia as a unit.In this mini-review,we discuss how angiogenesis might couple with axonal outgrowth/neurogenesis and work for functional recovery after cerebral ischemia.Angiogenesis occurs within 4 to 7 days after cerebral ischemia in the border of the ischemic core and periphery.Post-ischemic angiogenesis may contribute to neuronal remodeling in at least two ways and is thought to contribute to functional recovery.First,new blood vessels that are formed after ischemia are thought to have a role in the guidance of sprouting axons by vascular endothelial growth factor and laminin/β1-integrin signaling.Second,blood vessels are thought to enhance neurogenesis in three stages:1)Blood vessels enhance proliferation of neural stem/progenitor cells by expression of several extracellular signals,2)microvessels support the migration of neural stem/progenitor cells toward the peri-infarct region by supplying oxygen,nutrients,and soluble factors as well as serving as a scaffold for migration,and 3)oxygenation induced by angiogenesis in the ischemic core is thought to facilitate the differentiation of migrated neural stem/progenitor cells into mature neurons.Thus,the regions of angiogenesis and surrounding tissue may be coupled,representing novel treatment targets. | Masahiro Hatakeyama Itaru Ninomiya Masato Kanazawa | 2020 | Neural Regeneration Research2020，15，1： | 63 |
| 2 | Evolving concepts in bone infection: redefining “biofilm”,“acute vs. chronic osteomyelitis”, “the immune proteome” and “local antibiotic therapy”显示文摘Osteomyelitis is a devastating disease caused by microbial infection of bone. While the frequency of infection following elective orthopedic surgery is low, rates of reinfection are disturbingly high. Staphylococcus aureus is responsible for the majority of chronic osteomyelitis cases and is often considered to be incurable due to bacterial persistence deep within bone. Unfortunately, there is no consensus on clinical classifications of osteomyelitis and the ensuing treatment algorithm. Given the high patient morbidity,mortality, and economic burden caused by osteomyelitis, it is important to elucidate mechanisms of bone infection to inform novel strategies for prevention and curative treatment. Recent discoveries in this field have identified three distinct reservoirs of bacterial biofilm including: Staphylococcal abscess communities in the local soft tissue and bone marrow, glycocalyx formation on implant hardware and necrotic tissue, and colonization of the osteocyte-lacuno canalicular network(OLCN) of cortical bone. In contrast, S.aureus intracellular persistence in bone cells has not been substantiated in vivo, which challenges this mode of chronic osteomyelitis. There have also been major advances in our understanding of the immune proteome against S. aureus, from clinical studies of serum antibodies and media enriched for newly synthesized antibodies(MENSA), which may provide new opportunities for osteomyelitis diagnosis, prognosis, and vaccine development. Finally, novel therapies such as antimicrobial implant coatings and antibiotic impregnated 3D-printed scaffolds represent promising strategies for preventing and managing this devastating disease. Here, we review these recent advances and highlight translational opportunities towards a cure. | Elysia A. Masters Ryan P. Trombetta Karen L. de Mesy Bentley Brendan F Boyce Ann Lindley Gill Steven R. Gill Kohei Nishitani Masahiro Ishikawa Yugo Morita Hiromu Ito Sheila N. Bello-Irizarry Mark Ninomiya James D. Brodell Jr. Charles C. Lee Stephanie P. Hao Irvin Oh Chao Xie Hani A. Awad John L. Daiss John R. Owen Stephen L. Kates Edward M. Schwarz Gowrishankar Muthukrishnan | 2019 | Bone Research2019，7，3： | 19 |
| 3 | A Weakly Supervised Deep Learning Framework for Sorghum Head Detection and Counting显示文摘The yield of cereal crops such as sorghum(Sorghum bicolor L.Moench)depends on the distribution of crop-heads in varying branching arrangements.Therefore,counting the head number per unit area is critical for plant breeders to correlate with the genotypic variation in a specific breeding field.However,measuring such phenotypic traitsmanually is an extremely labor-intensive process and suffers from low efficiency and human errors.Moreover,the process is almost infeasible for large-scale breeding plantations or experiments.Machine learning-based approaches like deep convolutional neural network(CNN)based object detectors are promising tools for efficient object detection and counting.However,a significant limitation of such deep learningbased approaches is that they typically require a massive amount of hand-labeled images for training,which is still a tedious process.Here,we propose an active learning inspired weakly supervised deep learning framework for sorghum head detection and counting from UAV-based images.We demonstrate that it is possible to significantly reduce human labeling effort without compromising final model performance(��2 between human count and machine count is 0.88)by using a semitrained CNN model(i.e.,trained with limited labeled data)to perform synthetic annotation.In addition,we also visualize key features that the network learns.This improves trustworthiness by enabling users to better understand and trust the decisions that the trained deep learning model makes. | Sambuddha Ghosal Bangyou Zheng Scott CChapman Andries BPotgieter David RJordan Xuemin Wang Asheesh KSingh Arti Singh Masayuki Hirafuji Seishi Ninomiya Baskar Ganapathysubramanian Soumik Sarkar Wei Guo | 2019 | Plant Phenomics2019，1，1： | 16 |
| 4 | 利用CCSEM对煤中矿物特性及其燃烧转化行为的研究显示文摘利用计算机控制扫描电镜技术(Computer Controlled Scanning Electron Microscopy,CCSEM)研究了煤中矿物特性及其在燃烧过程中的转化行为。结果表明原煤中矿物主要为粘土和黄铁矿,且主要以外在矿物的形式存在,粒径多在10μm以上,而内在矿物绝大部分小于10μm。不同矿物具有不同的粒径分布和内在/外在特性,显示煤中矿物分布的非均一性。煤灰主要由莫来石、铁、钙和钠的铝硅酸盐组成。通过K、Fe、Ca和Na在原煤及其产物所含矿物中的质量分布对比,揭示了它们在燃烧过程中的转化行为。煤灰粒径的变大是矿物颗粒熔融聚合的结果。 | 于敦喜 徐明厚 姚洪 刘小伟 Zhang Lian Wang Qunying Yoshihiko Ninomiya | 2007 | 工程热物理学报2007，28，5： | 14 |
| 5 | 燃煤电厂印尼褐煤氧化自燃过程实验研究显示文摘针对两种印尼褐煤进行了自燃倾向性评价,研究了印尼低热和高热褐煤煤堆在堆放周期内不同高度和不同深度方位温度变化规律.结果表明,在相同的堆放时间下,低热褐煤煤堆达到自燃敏感温度区域范围比高热褐煤煤堆广泛,同时建立煤堆内部温度和表面温度的函数关系,并对印尼褐煤煤堆进行热值损失评估,为燃煤电厂印尼褐煤合理堆放和周转提供科学指导. | 苏攀 王群英 张琨 岳益锋 陈龙 郑智扬 Yoshihiko Ninomiya | 2014 | 煤炭转化2014，37，4： | 12 |
| 6 | Characterization of peach tree crown by using high-resolution images from an unmanned aerial vehicle显示文摘In orchards, measuring crown characteristics is essential for monitoring the dynamics of tree growth and optimizing farm management. However, it lacks a rapid and reliable method of extracting the features of trees with an irregular crown shape such as trained peach trees. Here, we propose an efficient method of segmenting the individual trees and measuring the crown width and crown projection area (CPA) of peach trees with time-series information, based on gathered images. The images of peach trees were collected by unmanned aerial vehicles in an orchard in Okayama, Japan, and then the digital surface model was generated by using a Structure from Motion (SfM) and Multi-View Stereo (MVS) based software. After individual trees were identified through the use of an adaptive threshold and marker-controlled watershed segmentation in the digital surface model, the crown widths and CPA were calculated, and the accuracy was evaluated against manual delineation and field measurement, respectively. Taking manual delineation of 12 trees as reference, the root-mean-square errors of the proposed method were 0.08 m (R^(2) = 0.99) and 0.15 m (R^(2) = 0.93) for the two orthogonal crown widths, and 3.87 m2 for CPA (R^(2) = 0.89), while those taking field measurement of 44 trees as reference were 0.47 m (R^(2) = 0.91), 0.51 m (R^(2) = 0.74), and 4.96 m2 (R^(2) = 0.88). The change of growth rate of CPA showed that the peach trees grew faster from May to July than from July to September, with a wide variation in relative growth rates among trees. Not only can this method save labour by replacing field measurement, but also it can allow farmers to monitor the growth of orchard trees dynamically. | Yue Mu Yuichiro Fujii Daisuke Takata Bangyou Zheng Koji Noshita Kiyoshi Honda Seishi Ninomiya Wei Guo | 2018 | Horticulture Research2018，5，1： | 9 |
| 7 | The Mineral Transformation of Huainan Coal Ashes in Reducing Atmospheres显示文摘By using the advanced instrumentation of a Computer Controlled Scanning Electron Microscope (CCSEM), X-ray diffraction (XRD) and X-ray fluorescence (XRF), the ash composition and the mineral components of six typical Huainan coals of different origins were studied. The transformation of mineral matter at high temperatures was tracked by XRD in reducing conditions. The quartz phase decreased sharply and the anorthite content tended to increase at first and then decreased with increasing temperatures. The formed mullite phase reached a maximum at 1250 ℃ but showed a tendency of slow decline when the temperature was over 1250 ℃ . The mullite formed in the heating process was the main reason of the high ash melting temperature of Huainan coals. Differences in peak intensity of mullite and anorthite reflected differences in phase concentration of the quenched slag fractions, which contributed to the differences in ash melting temperatures. The differences in the location of an amorphous hump maximum indicated differences of glass types which may affect ash melting temperatures. For Huainan coal samples with relatively high ash melting tempera- tures, the intensity of the diffraction lines for mullite under reducing condition is high while for the samples with rela- tively low ash melting temperature the intensity for anorthite is high. | LI Han-xu Yoshihiko Ninomiya DONG Zhong-bing ZHANG Ming-xu | 2006 | Journal of China University of Mining and Technology2006，16，2： | 9 |
| 8 | Peritoneal bleeding due to percutaneous transhepatic gallbladder drainage:An autopsy report显示文摘A 77-year-old man underwent percutaneous transhepatic gallbladder drainage(PTGBD) for acute cholecystitis as a preoperative procedure;however,he suddenly suffered cardiopulmonary arrest 4 h after the PTGBD and died.There were three centesis scars for the PTGBD,and only one pathway from the most dorsal centesis scar reached the gallbladder.Microscopically,the PTGBD pathway crossed and injured the intrahepatic arterial wall,and hepatic parenchymal bleeding extended along the PTGBD pathway to the inferior surface of the liver.Blood flowed to the peritoneal cavity through a small gap between the liver and gallbladder.Consequently,the PTGBD caused lethal bleeding.When the percutaneous transhepatic cholangio drainage/PTGBD pathway runs close to vessels near the liver surface,it might be necessary to deal with the possibility of rapid and lethal peritoneal bleeding. | Yoko Ihama Maki Fukazawa Kenji Ninomiya Takumi Nagai Chiaki Fuke Tetsuji Miyazaki | 2012 | World Journal of Hepatology2012，4，10： | 7 |
| 9 | A novel negative regulatory mechanism of Smurf2 in BMP/Smad signaling in bone显示文摘Transforming growth factor-β(TGF-β)and bone morphogenetic protein(BMP)play important roles in bone metabolism.Smad ubiquitination regulatory factors(Smurfs)regulate TGF-β/BMP signaling via ubiquitination,resulting in degradation of signaling molecules to prevent excessive activation of TGF-β/BMP signaling.Though Smurf2 has been shown to negatively regulate TGF-β/Smad signaling,its involvement in BMP/Smad signaling in bone metabolism has not been thoroughly investigated.In the present study,we sought to evaluate the role of Smurf2 in BMP/Smad signaling in bone metabolism.Absorbable collagen sponges containing 3μg of recombinant human BMP2(rhBMP2)were implanted in the dorsal muscle pouches of wild type(WT)and Smurf2−/−mice.The rhBMP2-induced ectopic bone in Smurf2−/−mice showed greater bone mass,higher mineral apposition and bone formation rates,and greater osteoblast numbers than the ectopic bone in WT mice.In WT mice,the ectopic bone consisted of a thin discontinuous outer cortical shell and scant inner trabecular bone.In contrast,in Smurf2−/−mice,the induced bone consisted of a thick,continuous outer cortical shell and abundant inner trabecular bone.Additionally,rhBMP2-stimulated bone marrow stromal cells(BMSCs)from Smurf2−/−mice showed increased osteogenic differentiation.Smurf2 induced the ubiquitination of Smad1/5.BMP/Smad signaling was enhanced in Smurf2−/−BMSCs stimulated with rhBMP2,and the inhibition of BMP/Smad signaling suppressed osteogenic differentiation of these BMSCs.These findings demonstrate that Smurf2 negatively regulates BMP/Smad signaling,thereby identifying a new regulatory mechanism in bone metabolism. | Junichi Kushioka Takashi Kaito Rintaro Okada Hiroyuki Ishiguro Zeynep Bal Joe Kodama Ryota Chijimatsu Melanie Pye Masahiro Narimatsu Jeffrey LWrana Yasumichi Inoue Hiroko Ninomiya Shin Yamamoto Takashi Saitou Hideki Yoshikawa Takeshi Imamura | 2020 | Bone Research2020，8，4： | 6 |
| 10 | Priming with G-CSF effectively enhances low-dose Ara-C-induced in vivo apoptosis in myeloid leukemia cells显示文摘 | Amuguleng Bai Hiroshi Kojima Mitsuo Hori Nobuo Nara Takuya Komeno Yuichi Hasegawa Haruhiko Ninomiya Tsukasa Abe Toshiro Nagasawa | 1999 | Experimental Hematology1999，，2： | 3 |
| 11 | Easy MPE:Extraction of Quality Microplot Images for UAV-Based High-Throughput Field Phenotyping显示文摘Microplot extraction(PE)is a necessary image processing step in unmanned aerial vehicle-(UAV-)based research on breeding fields.At present,it is manually using ArcGIS,QGIS,or other GIS-based software,but achieving the desired accuracy is timeconsuming.We therefore developed an intuitive,easy-to-use semiautomatic program for MPE called Easy MPE to enable researchers and others to access reliable plot data UAV images of whole fields under variable field conditions.The program uses four major steps:(1)binary segmentation,(2)microplot extraction,(3)production of∗.shp files to enable further file manipulation,and(4)projection of individual microplots generated from the orthomosaic back onto the raw aerial UAV images to preserve the image quality.Crop rows were successfully identified in all trial fields.The performance of the proposed method was evaluated by calculating the intersection-over-union(IOU)ratio between microplots determined manually and by Easy MPE:the average IOU(±SD)of all trials was 91%(±3). | Léa Tresch Yue Mu Atsushi Itoh Akito Kaga Kazunori Taguchi Masayuki Hirafuji Seishi Ninomiya Wei Guo | 2019 | Plant Phenomics2019，1，1： | 3 |
| 12 | Phase II trial of S-1 for neoadjuvant chemotherapy against scirrhous gastric cancer (JCOG 0002)显示文摘 | Taira Kinoshita Mitsuru Sasako Takeshi Sano Hitoshi Katai Hiroshi Furukawa Akira Tsuburaya Isao Miyashiro Masahide Kaji Motoki Ninomiya | 2009 | Gastric Cancer2009，，1： | 3 |
| 13 | Plant Phenomics:Emerging Transdisciplinary Science显示文摘Humankind is facing an unprecedented challenge to produce enough food for the coming decades because of population growth and increase in the average demand per capita,changes in climate conditions,and limitations in arable land area,as well as pressure on the water and resources.Two main avenues should be concurrently taken to increase crop productivity:improving genetics to get more efficient and resilient crops and developing optimal crop management practices.The description and understanding of crop functioning will therefore be instrumental both for genetic improvement and crop management.It will help to associate functional traits with the genome which will accelerate genetic progress by having more efficient techniques to design ideotypes adapted to particular pedoclimatic and crop management conditions and create them from the available genetic diversity. | Seishi Ninomiya Frédéric Baret Zong-Ming(Max)Cheng | 2019 | Plant Phenomics2019，1，1： | 2 |
| 14 | Clinicopathology of pancreaticobiliary maljunction: relationship between alterations in background biliary epithelium and neoplastic development显示文摘 | Makoto Seki Akio Yanagisawa Eiji Ninomiya Yasuro Ninomiya Hirotoshi Ohta Akio Saiura Junji Yamamoto Toshiharu Yamaguchi Akiko Aruga Keiko Yamada Koichi Takano Rikiya Fujita Masayuki Ikeda Keiko Sasaki Yo Kato | 2005 | Journal of Hepato - Biliary - Pancreatic Surgery2005，，3： | 2 |
| 15 | Hepatocyte growth factor and transforming growth factor β1 contribute to regeneration of small-for-size liver graft immediately after transplantation显示文摘 | Mizuki Ninomiya Noboru Harada Satoko Shiotani Shoji Hiroshige Ryosuke Minagawa Yuji Soejima Taketoshi Suehiro Takashi Nishizaki Mitsuo Shimada Keizo Sugimachi | 2003 | Transplant International2003，，11： | 2 |
| 16 | Dendritic cells with immature phenotype and defective function in the peripheral blood from patients with hepatocellular carcinoma显示文摘 | Ninomiya T Akbar SM Masumoto T | 1999 | J Hepatol1999，31，2： | 2 |
| 17 | PTD classification: proposal for a new classification of gastric cancer location based on physiological lymphatic flow显示文摘 | Shinichi Kinami Takashi Fujimura Eisuke Ojima Sachio Fushida Toshihiko Ojima Hiroshi Funaki Hideto Fujita Hiroyuki Takamura Itasu Ninomiya Genichi Nishimura Masato Kayahara Tetsuo Ohta Zen Yoh | 2008 | International Journal of Clinical Oncology2008，，4： | 2 |
| 18 | Neoadjuvant chemotherapy with gemcitabine for pancreatic cancer increasesin situ expression of the apoptosis marker M30 and stem cell marker CD44显示文摘 | Hidehiro Tajima Tetsuo Ohta Hirohisa Kitagawa Koichi Okamoto Seisho Sakai Jun Kinoshita Isamu Makino Hiroyuki Furukawa Hironori Hayashi Keishi Nakamura Katsunobu Oyama Masafumi Inokuchi Hisatoshi Nakagawara Hideto Fujita Hiroyuki Takamura Itasu Ninomiya S | 2012 | Oncology Letters2012，，： | 2 |
| 19 | Diabetes mellitus and cancer risk: Review of the epidemiological evidence显示文摘 | Kentaro Shikata Toshiharu Ninomiya Yutaka Kiyohara | 2012 | Cancer Sci2012，，1： | 2 |
| 20 | Effects of coal blending on the reduction of PM 10 during high-temperature combustion 1. Mineral transformations显示文摘 | Qunying Wang Lian Zhang Atsushi Sato Yoshihiko Ninomiya Toru Yamashita | 2008 | Fuel2008，，13： | 2 |
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