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| 1 | 中国植物应答环境变化研究的过去与未来显示文摘中华人民共和国建国70周年,特别是改革开放40年以来,中国科技工作者在植物研究领域取得了举世瞩目的成绩.这篇综述简要地总结了中国植物学家以模式植物拟南芥,以及水稻、玉米、小麦和棉花等农作物为研究材料,在植物应答非生物逆境胁迫,包括干旱、高温、低温、盐碱、重金属、铝毒害和光胁迫等领域的基础研究和应用成果;同时也提出了植物非生物逆境研究领域亟待解决的重大问题、作物稳产分子设计的重大需求和创制耐受多种逆境环境的绿色新种质的可能性. | 杨淑华 巩志忠 郭岩 龚继明 郑绍建 林荣呈 杨洪全 毛龙 秦峰 罗利军 张天真 储成才 赖锦盛 晁代印 关雪莹 彭佳师 黄朝峰 蒋才富 王瑜 杨永青 施怡婷 丁杨林 马亮 种康 | 2019 | 中国科学:生命科学2019，49，11： | 18 |
| 2 | 水稻扇型植硅体野生–驯化特征研究进展显示文摘近年来,植硅体分析方法被广泛应用于考古学领域,为世界农业起源、演化研究提供了新的手段和关键证据,其中在稻作农业起源和传播的研究中,水稻扇型植硅体对于发现、鉴定水稻遗存起到了重要的作用。研究农业起源的关键,是找到地质考古记录中的植物遗存,并准确鉴定野生–驯化特征,本文介绍了水稻扇型植硅体鉴定方法从定性到定量研究的历史,重点阐述了现代野生稻生长区、驯化水稻田、旱稻田表土中水稻扇型植硅体鱼鳞状纹饰研究的新进展,明确了野生、驯化水稻扇型植硅体研究中关于个体鉴定、选择和鱼鳞状纹饰计数的标准,在此基础上讨论了野生和驯化水稻扇型植硅体纹饰产生差异的可能原因和机制。希望通过本文的总结与讨论,能够使植硅体分析方法在作物起源和传播的研究中得到更准确、更广泛的应用。 | 郇秀佳 吕厚远 王灿 张健平 | 2020 | 古生物学报2020，59，4： | 14 |
| 3 | 节水抗旱稻发展现状、优势及需解决的主要问题显示文摘节水抗旱稻是一类新型水稻品种,集高产、优质和节水抗旱于一体。发展节水抗旱稻不仅可降低水稻生产对水资源的依赖,扩大水稻种植范围和面积,有利于保障粮食安全,还变革了传统水稻的种植方式,可显著降低水稻生产的劳动强度以及对环境的负面影响,促进资源节约型和环境友好型“两型”农业的发展。本文论述了我国节水抗旱稻发展现状、优势,分析了可能制约节水抗旱稻发展的主要因素,提出了节水抗旱稻未来的主要研究方向,以期为节水抗旱稻扩大推广应用提供参考。 | 李兴华 汪吴凯 杨特武 周强 夏方招 | 2022 | 华中农业大学学报2022，41，1： | 11 |
| 4 | 节水抗旱稻的培育与产业发展显示文摘节水抗旱稻(Water-saving and drought-resistance rice,WDR)是指既具有水稻高产优质特性,又具有旱稻节水抗旱特性的一种新的栽培稻类型(NY/T 2862-2015),是在水稻科技进步的基础上,通过进一步整合现代优良水稻与旱稻品种的优良特性而成。节水抗旱稻的节水、抗旱和耐直播能力较强,可采用“旱直播旱管”的绿色栽培模式,可在水田不淹水栽培,大幅度节约灌溉用水,减少面源污染和甲烷排放,也可在旱地或山坡地种植,拓展水稻种植空间。本文简要介绍了节水抗旱稻的概念、特点以及培育与改良策略,表列了团队育成审定的23个节水抗旱稻品种及各自主要特点及适种区域,对节水抗旱稻的产业发展目标进行了讨论。 | 罗利军 | 2022 | 中国稻米2022，28，5： | 7 |
| 5 | 节水抗旱稻的概念与发展历程显示文摘水稻是最重要的粮食作物之一,近60年来,以提高水稻单产为主要目标的育种与栽培技术研究取得了重要进展,但目前水稻生产仍面临着资源与环境的严峻挑战。节水抗旱稻的发展为应对这些挑战提供了较好的解决方案。节水抗旱稻是在水稻科技进步的基础上,通过进一步整合现代水稻与旱稻的优良特性而育成的新型栽培稻品种,其水分利用效率与抗旱性明显增强,可采用“旱直播旱管”的绿色栽培模式,既可在水田不淹水栽培,又可在旱地或山坡地种植,极大拓展了水稻的种植空间,生产过程中可大幅节约灌溉用水、减少面源污染和甲烷排放、降低劳动成本。系统介绍了栽培稻的水陆生态型分化与抗旱性进化以及节水抗旱稻的概念与特点、培育与改良策略、栽培技术与推广区域,并对节水抗旱稻的发展目标与方向进行了详细讨论。 | 罗利军 | 2022 | 上海农业学报2022，38，4： | 5 |
| 6 | Blue revolution for food security under carbon neutrality: A case from the water-saving and drought-resistance rice显示文摘The increasing concentration of greenhouse gases(GHGs)in Earth's atmosphere leads to global warming,which further causes a series of climate changes and does great harm to both human society and natural ecosystems.Agricultural GHG emissions,mainly in theform of methane(CH4)and nitrous oxide(N2O),areasignificantsourceofGHGs,accountingfor~14%total global GHGs(Zhang et al.,2022).One major source of agricultural GHGs is CH4 emissions from rice paddies,which is responsiblefor~10%-12%ofhuman-inducedCH4emissions(van Groenigen et al.,2013)and contributes~2.40%to the enhanced global warming effect(Zhang et al.,2022).The global warming potential of GHGs emissions from rice systems is roughly four times higher than either wheat or maize(Linquist et al.,2012). | Hui Xia Xianxian Zhang Yi Liu Junguo Bi Xiaosong Ma Anning Zhang Hongyan Liu Liang Chen Sheng Zhou Huan Gao Kai Xu Haibin Wei Guolan Liu Feiming Wang Hongyang Zhao Xingxing Luo Danping Hou Qiaojun Lou Fangjun Feng Liguo Zhou Shoujun Chen Ming Yan Tianfei Li Mingshou Li LeiWang Zaochang Liu Xinqiao Yu HanweiMei Lijun Luo | 2022 | Molecular Plant2022，15，9： | 3 |
| 7 | Rice bioinformatics in the genomic era: Status and perspectives显示文摘Rice is one of cereal crops and a model species for monocots.Since the release of the first draft rice genome sequences in 2002,considerable progress has been achieved in rice genomic researches,thanks to rapid development and efficient utilization of bioinformatics methods and tools.In this review,we summarize the progress of studies of rice genome sequencing and other omics and introduce the wellmaintained bioinformatics databases and tools developed for rice genome resources and breeding.After reviewing the history of rice bioinformatics,we use single-cell sequencing and machine learning as examples showing how bioinformatics integrates emerging technologies and how it continues to develop for future rice research. | Lei Jia Lingjuan Xie Sangting Lao Qian-Hao Zhu Longjiang Fan | 2021 | The Crop Journal2021，9，3： | 2 |
| 8 | Genomic landscape of parallel domestication of upland rice and its implications显示文摘Parallel domestication has been widely acknowledged but its genetic basis remains largely unclear.As an important rice ecotype,upland rice was assumedly domesticated multiple times in two rice subspecies(Indica and Japonica)and provides a feasible system to explore the genetic basis of parallel domestication.To uncover the genome-wide pattern of genetic differentiation between upland and lowland rice and explore the parallelism of genetic changes during upland rice domestication,we obtained whole-genome sequences of 95 rice landraces and yielded genome-wide expression data for five tissues of representative accessions of upland and lowland rice.Our phylogenetic analyses confirmed multiple domestications of the upland ecotype in two rice subspecies.Genomic scans based on resequencing data identified substantial differentiation between the upland and lowland ecotypes with 11.4%and 14.8%of the genome diverged between the two ecotypes in Indica and Japonica,respectively.Further genome-wide gene expression analyses found that 30%of effectively expressed genes were significantly differentiated between two ecotypes,indicating the importance of regulation changes in the domestication of upland rice.Importantly,we found that only 1.8%of differentiated genomes and 1.6%of differentially expressed genes were shared by upland Indica and upland Japonica,suggestive of largely unparal lelgenetic alterations during upland rice domestication.These findings not only provide new insights into the genetic basis of parallel domestication at the genome scale but could also facilitate genetic improvement and breeding of rice and crops in general. | Mei-Xia Wang Chun-Yan Jing Xiu-Hua Wang Zhe Cai Lian Zhou Mu-Fan Geng Jing-Dan Han Jie Guo Fu-Min Zhang Song Ge | 2021 | Journal of Systematics and Evolution2021，59，2： | 2 |
| 9 | Dissecting Genetic Basis of Deep Rooting in Dongxiang Wild Rice显示文摘Deep rooting is an important trait in rice drought resistance.Genetic resources of deep-rooting varieties are valuable in breeding of water-saving and drought-resistant rice.In the present study,234BC2F7 backcross introgression lines were derived from a cross of Dongye 80(an accession of Dongxiang wild rice as the donor parent)and R974(an indica restorer line as the recurrent parent).A genetic linkage map containing 1977 bin markers was constructed by ddRADSeq for QTL analysis.Thirty-one QTLs for four root traits(the number of deep roots,the number of shallow roots,the total number of deep roots and the ratio of deep roots)were assessed on six rice chromosomes in two environments(2020 Shanghai and 2021 Hainan).Two of the QTLs,qDR5.1 and qTR5.2,were located on chromosome 5 in a 70-kb interval.They were detected in both environments.qDR5.1 explained 13.35%of the phenotypic variance in 2020 Shanghai and 12.01%of the phenotypic variance in 2021 Hainan.qTR5.2 accounted for 10.88%and 10.93%of the phenotypic variance,respectively.One QTL(qRDR2.2)for the ratio of deep roots was detected on chromosome 2 in a 210-kb interval and accounted for 6.72%of the phenotypic variance in 2020.The positive effects of these three QTLs were all from Dongxiang wild rice.Furthermore,nine and four putative candidate genes were identified in qRDR2.2 and qDR5.1/qTR5.2,respectively.These findings added to our knowledge of the genetic control of root traits in rice.In addition,this study will facilitate the future isolation of candidate genes of the deep-rooting trait and the utilization of Dongxiang wild rice in the improvement of rice drought resistance. | NIE Yuanyuan XIA Hui MA Xiaosong LOU Qiaojun LIU Yi ZHANG Anling CHENG Liang YAN Longan LUO Lijun | 2022 | Rice science2022，29，3： | 1 |
| 10 | 陆稻的起源与适应性进化研究进展显示文摘陆稻是栽培稻最重要的生态型之一,在长期适应旱作农业生境的过程中,具有节水抗旱、养分高效、耐直播等诸多绿色性状,是“绿色超级稻”与“节水抗旱稻”研发中的重要种质资源。近年来,陆稻起源与其抗旱性为主的适应性进化的问题逐步受到重视,先后有许多学者采取不同方法、从不同角度研究了陆稻与水稻的适应性分化,并初步揭示了陆稻及其基因资源起源与进化的遗传机制,为科学利用陆稻绿色基因资源发展节水抗旱稻提供了理论依据。该文综述了近30年来陆稻抗旱性起源与进化的研究进展,阐述陆稻起源与进化中的各种观点,并对未来陆稻绿色遗传资源的研究和应用提出展望。 | 罗志 周衡陵 李静 李朝阳 王磊 罗利军 夏辉 | 2022 | 上海农业学报2022，38，4： | 1 |
| 11 | 水稻耐旱性及其研究进展显示文摘耐旱性是指植株耐受低水势并维持一定水平生理活动和生长发育的能力,是水稻抗旱的重要作用机制之一。要准确鉴定水稻的耐旱性,必须最大限度地减少避旱性等其他抗旱机制的影响。笔者简要概述了水稻耐旱性的基本含义、耐旱性研究方法、耐旱性评价指标以及耐旱性的遗传学和功能基因组学的研究进展,并对如何进一步加强水稻耐旱性的研究进行了讨论。 | 马孝松 曾贤军 李恩熙 梅捍卫 罗利军 刘鸿艳 | 2022 | 上海农业学报2022，38，4： | 1 |
| 12 | 水旱稻分化与节水抗旱稻显示文摘普通野生稻在向栽培稻演化的过程中,形成旱稻和水稻两类适应不同土壤水分条件的生态类型,其中旱稻先于水稻驯化且长期受到“产量-抗旱性”的“双向选择”。采用“双向选择”策略,可将水稻的高产优质特性与旱稻的节水抗旱特性整合,育成节水抗旱稻。节水抗旱稻的水分利用效率高、抗旱性强,适合于“旱直播旱管”的绿色栽培模式,既可在水田不淹水栽培,又可在旱地或山坡地直播种植,拓展了栽培稻的种植空间。节水抗旱稻生产过程中可大幅度节约灌溉用水,减少面源污染和甲烷排放,降低劳动成本。 | 罗利军 | 2022 | 自然杂志2022，44，5： | 1 |
| 13 | Genome-wide transcriptome analysis of roots in two rice varieties in response to alternate wetting and drying irrigation显示文摘Alternate wetting and drying(AWD)irrigation has been widely used as an efficient rice production method to obtain better yield without continuous flooding(CF)of the paddy field.However,how this practice affects gene expression to regulate rice physiology and morphology is largely unknown.In this study,we used two rice varieties,Nipponbare,a lowland rice cultivar,and Gaoshan 1,an upland cultivar,and found that root dry weight(RDW)and root oxidation activity(ROA)in both cultivars substantially increased in response to AWD.We then analyzed the differences in transcriptome profiles of their roots irrigated in AWD vs.CF conditions.AWD responsive genes are mainly involved in lignin biosynthetic pathway and phytohormone signal transduction pathway and belong mainly to b HLH,b ZIP,NAC,WRKY,and HSF transcription factor families.We discussed how these differentially expressed genes may contribute to the morphological adaptations observed in roots exposed to AWD.This analysis also provides useful information to explain the similarities and differences in adaptation to AWD irrigation between the two rice ecotypes. | Tao Song Debatosh Das Feng Yang Moxian Chen Yuan Tian Chaolin Cheng Chao Sun Weifeng Xu Jianhua Zhang | 2020 | The Crop Journal2020，8，4： | 1 |
| 14 | 广西地区籼型陆稻、深水稻与水稻的遗传分化显示文摘广西是我国栽培稻种质资源的多样性中心之一,分布有陆稻、深水稻与水稻3种不同的栽培稻生态型。这3种栽培稻生态型适应不同的农业生境,具有丰富且不同的遗传资源,有必要对其遗传多样性与遗传分化进行研究。本试验基于全基因组SNP研究了广西地区籼型陆稻、深水稻与水稻生态型的遗传多样性及其两两间的遗传分化。结果表明:上述3种生态型间总体遗传分化程度较低,遗传多样性相近,但两两生态型间存在少数高分化区间。其中,在深水稻-水稻的高分化区间富集了4个已知耐淹基因;陆稻-水稻及深水稻-水稻高分化区间富集了许多已知抗旱基因。由此可以推测,3种生态型两两间的高分化区间蕴藏着丰富的抗旱、耐淹及其他适应性基因,与其适应不同的农业生境相关。本研究结果可为栽培稻种质资源适应性基因资源的挖掘、研究和应用提供理论依据。 | 王磊 罗志 周衡陵 李静 夏辉 | 2022 | 上海农业学报2022，38，4： | 0 |
| 15 | The ABA synthesis enzyme allele OsNCED2^(T)promotes dryland adaptation in upland rice显示文摘Upland rice shows dryland adaptation in the form of a deeper and denser root system and greater drought resistance than its counterpart,irrigated rice.Our previous study revealed a difference in the frequency of the OsNCED2 gene between upland and irrigated populations.A nonsynonymous mutation(C to T,from irrigated to upland rice)may have led to functional variation fixed by artificial selection,but the exact biological function in dryland adaptation is unclear.In this study,transgenic and association analysis indicated that the domesticated fixed mutation caused functional variation in OsNCED2,increasing ABA levels,root development,and drought tolerance in upland rice under dryland conditions.OsNCED2-overexpressing rice showed increased reactive oxygen species-scavenging abilities and transcription levels of many genes functioning in stress response and development that may regulate root development and drought tolerance.OsNCED2^(T)-NILs showed a denser root system and drought resistance,promoting the yield of rice under dryland conditions.OsNCED2^(T)may confer dryland adaptation in upland rice and may find use in breeding dryland-adapted,water-saving rice. | Liyu Huang Yachong Bao Shiwen Qin Min Ning Qinyan Li Qingmao Li Shilai Zhang Guangfu Huang Jing Zhang Wensheng Wang Binying Fu Fengyi Hu | 2024 | The Crop Journal2024，12，1： | 0 |
| 16 | 陆稻早期幼苗陆生适应性鉴定及综合评价显示文摘【目的】鉴定陆稻种质资源早期幼苗的陆生适应性,筛选出具备低水分胁迫萌发、深土出苗能力的优势种质资源,为培育具有优良陆生适应性的新品种提供种质资源和参考依据。【方法】在150 g/L乙二醇(PEG6000)模拟低水分胁迫及8 cm深土壤播种条件下,评价‘黄华占’‘龙粳39’‘京越1号’等24份水稻和‘陆引46’‘IRAT318’‘IRAT11’等24份陆稻改良品种的陆生适应性指标,同时对246份地方陆稻种质资源进行相关指标测定。通过主成分分析、隶属函数和陆生适应性综合评价值对参试种质资源进行评价,并利用聚类分析进行分类。【结果】在低水分胁迫条件下,典型水、陆稻品种的相对发芽率、发芽势、根长、芽长、根数均存在极显著差异,可作为陆稻早期幼苗陆生适应性的鉴定指标。在深土播种条件下,根长、芽长、中胚轴长和胚芽鞘长对幼苗出土起着主效作用。根据它们陆生适应性的差异,可将294份供试材料的陆生适应性划分为极强型(Ⅰ类)、强型(Ⅱ类)、中间型(Ⅲ类)、弱型(Ⅳ类)和极弱型(Ⅴ类)5类,最终筛选出7份陆生适应性强的种质资源。【结论】本研究初步确定了陆稻早期幼苗的陆生适应性鉴定指标,并对云南地方陆稻进行综合评价,可为旱直播稻新品种的培育提供基础。 | 张德宇 CHALI Biru Alemu PHYU Phyu Thin 路承凯 陆炳悦 陆定科 王效宁 万金鹏 徐鹏 | 2023 | 华南农业大学学报2023，44，6： | 0 |
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