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| 1 | Characterizing the allopolyploid species among the wild relatives of soybean: Utility of reduced representation genotyping methodologies显示文摘异源是在许多被子植物类的一个普通特征。在类 Glycine 的大豆的长期的野亲戚最近包括至少九形成(在最后百万年以内) allopolyploid taxa。这研究用染色体宽的单个核苷酸多型性(SNP ) 和网络分析检验了三 allopolyploid 和四双祖先 taxa。由定序的 Genotyping (GBS ) 被用来产生 SNP,结果与从 transcriptome 数据的以前的分析相比。定序的 Illumina 的三条小巷没有失踪的数据越过八 taxa 为 70 就职和 22806 SNP 的排列生产了遗传型。与网络分析相结合的排列从以前的研究证实了结果。另外, GBS 使可能的扩大采样鉴别也被分类或取样那的就职来自混合种子股票。最吸引人的结果是在 allopolyploids 从特别亚群被导出的双 taxa,和可能性的以内的以前未被认出的基础的发现。进 SNP 的 allopolyploid SNP 的分离源于 homoeologous 祖先种类显示 allopolyploids 不再与他们的双祖先分享遗传型但是从要遮住的直接祖先遗传型为信号长足够独立演变。 | Sue Sherman-Broyles Aureliano Bombarely Jeff Doyle | 2017 | Journal of Systematics and Evolution2017，55，4： | 2 |
| 2 | The draft genome of watermelon (Citrullus lanatus ) and reseqnencing of 20 diverse accessions显示文摘 | Guo S G Zhang J G Sun H H Salse J Lucas W J Zhang H Y Zheng Y Mao L Y Ren Y WangZ W Min J M Guo X S Murat F Ham B K Zhang Z L Gao S Huang M Xu Y M Zhong S L Bombarely A Mueller L Zhao H He H Q Zhang Y Zhang Z H Huang S W Tan T Pang E Lin K Hu Q Kuang H H Ni P X Wang B Liu J G Kou Q H Hou W J Zou X H Jiang J Gong G Y Klee K Schoof H Huang Y Hu X S Dong S S Liang D Q Wang J Wu K Xia Y Zhao X Zheng Z Q Xing M Liang X M Huang B Q Lv T Wang J Y Yin Y Yi H P Li R Q Wu M Z Levi A Zhang X P Giovannoni J Wang J Li YF Fei Z J Xu Y | 2013 | Nature genetics2013，45，1： | 1 |
| 3 | Riverine influence on N2 fixation in the upwelling region of Vietnam,South China Sea显示文摘 | Voss M Bombar D Loick N | 2006 | Geophysical Research Letters2006，33，： | 1 |
| 4 | TobEA:an atlas of tobacco gene expression from seed to senescence显示文摘 | Edwards K D Bombarely A Story G W | 2010 | BMC Genomics2010，11，： | 1 |
| 5 | Designing a transeriptome next-generation sequencing project for a nonmodel plant species 显示文摘 | STRICKLER S R BOMBARELY A MUELLER L A | 2012 | Am J Bot2012，99，2： | 1 |
| 6 | Adraft genome sequence of Nicotiana benthamiana to enhance molecular plant-microbe biology research显示文摘 | Bombarely A Rosli H G Vrebalov J Moffett P Mueller LA Martin G B | | 0，，12： | 1 |
| 7 | TobEA: an atlas of tobacco gene expression from seed to senescence显示文摘 | Edwards K D Bombarely A Story G W | 2010 | BMC Genomics2010，11，1： | 1 |
| 8 | Experimental and numerical investigation of bed-load transport under unsteady flows显示文摘 | Bombar G Elqi S Tayfur G | 2011 | Journal of Hydraulic Engineering2011，137，10： | 1 |
| 9 | The tomato genome sequence provides insights into fleshy fruit evolution 显示文摘 | Sato S Tabata S Hirakawa H Asamizu E Shlrasawa K Isobe S Kaneko T Nakamura Y Shibata D Aoki K Egholm M Knight J Bogden R Li C Shuang Y Xu X Pan S Cheng S Liu X Ren Y Wang J Albiero A Dal Pero F Todesco S Van Eck J Buels R M Bombarely A Gosselin J R Huang M Leto J A Menda N Strickler S Mao L Gao S Tecle I Y York T Zheng Y Vrebalov JT Lee J Zhong S Mueller L A Stiekema W J Ribeca P Alioto T Yang W Huang S Du Y Zhang Z Gao J Guo Y Wang X Li Y He J Li C Cheng Z Zuo J Ren J Zhao J Yan L Jiang H Wang B Li H Li Z Fu F Chen B Feng Q Fan D Wang Y Ling H Xue Y Ware D McCombie W R Lippman Z B Chia J M Jiang K Pasternak S Gelley L Kramer M Anderson L K Chang S B Royer S M Shearer L A Stack S M Rose J K Xu Y Eannetta N Matas A J McQuinn R Tanksley S D Camara F Guiga R Rombauts S Fawcett J Van de Peer Y Zamir D Liang C Spannagl M Gundlach H Bruggmann R Mayer K Jia Z Zhang J Ye Z Bishop G J Butcher S Lopez-Cobollo R Buchan D Filippis I Abbott J Dixit R Singh M Singh A Pal J K Pandit A Singh P K Mahato A K Gaikwad V D Sharma R R Mohapatra T Singh N K Causse M Rothan C Schiex T Noirot C Bellec A Klopp C Delalande C Berges H Mariette J Frasse P Vautrin S Zouine M Latch6 A Rousseau C Regad F Pech J C Philippot M Bouzayen M Pericard P Osorio S Fernandez del Carmen A Monforte A Granell A Fernandez-Mufioz R Conte M Lichtenstein G Carrari F De Bellis G Fuligni F Peano C Grandillo S Termolino P Pietrella M Fantini E Falcone G Fiore A Giuliano G Lopez L Facella P Perotta G Daddiego L Bryan G Orozco M Pastor X Torrents D van Schriek M G Feron R M van Oeveren J de Heer P daPonte L Jacobs-Oomen S Cariaso M Prins M van Eijk M J Janssen A van Haaren M J Jungeun Kim S H Kwon S Y Kim S Koo D H Lee S Hur C G Clouser C Rico A Hallab A Gebhardt C Klee K Jocker A Warfsmann J Gobel U Kawamura S Yano K Sherman J D Fukuoka H Negoro S Bhutty S Chowdhury P Chattopadhyay D Datema E Smit S Schijlen E G van de Belt J van Haarst J C Peters S A van Staveren M A Henkens M H Mooyman P J Hesselink T van Ham R C Jiang G Droege M Choi D Kang B C Kim B D Park M Kim S Yeom SI Lee YH Choi Y D Li G Gao J Liu Y Huang S Fernandez-Pedrosa V Collado C Zufiiga S Wang G Cade R Dietrich R A Rogers J Knapp S Fei Z White R A Thannhauser T W Giovannoni J J Botella M A Gilbert L Gonzalez R Goieoechea J L Yu Y Kudrna D Collura K Wissotski M Wing R Meyers BC Gurazada AB Green P J Vyas S M Solanke A U Kumar R Gupta V Sharma A K Khurana P Khurana J P Tyagi A K Dalmay T Mohorianu 1 Waits B Chamala S Barbazuk W B Li J Guo H Lee T H Wang Y Zhang D Paterson A H Wang X Tang H Barone A Chiusano M L Ereolano M R D' Agostino N Di Filippo M Traini A Sanseverino W Frusciante L Seymour G B Elharam M Fu Y Hua A Kenton S Lewis J Lin S Najar F Lai H Qin B Qu C Shi R White D White J Xing Y Yang K Yi J Yao Z Zhou L Roe B A Vezzi A D' Angelo M Zimbello R Sehiavon R Caniato E Rigobello C Campagna D Vitulo N Valle G Nelson D R De Paoli E Szinay D de Jong H H Bai Y Visser R G Klein R Beasley H McLaren K Nicholson C Riddle C Gianese G | 2012 | Nature2012，485，7400： | 1 |
| 10 | A draft genome sequence of Nicotiana benthamiana to enhance molecular plant-microbe biology research 显示文摘 | Bombarely A Rosli H G Vrebalov J Moffett P Mueller L A Martin G B | 2012 | Molecular Plant-Microbe Interactions2012，25，12： | 1 |
| 11 | Exploring transposable element-based markers to identify allelic variations underlying agronomic traits in rice显示文摘Transposable elements(TEs)are a major force in the production of new alleles during domestication;nevertheless,their use in association studies has been limited because of their complexity.We have developed a TE genotyping pipeline(TEmarker)and applied it to whole-genome genome-wide association study(GWAS)data from 176 Oryza sativa subsp.japonica accessions to identify genetic elements associated with specific agronomic traits.TE markers recovered a large proportion(69%)of single-nucleotide polymorphism(SNP)-based GWAS peaks,and these TE peaks retained ca.25%of the SNPs.The use of TEs in GWASs may reduce false positives associated with linkage disequilibrium(LD)among SNP markers.A genome scan revealed positive selection on TEs associated with agronomic traits.We found several cases of insertion and deletion variants that potentially resulted from the direct action of TEs,including an allele of LOC_Os11g08410 associated with plant height and panicle length traits.Together,these findings reveal the utility of TE markers for connecting genotype to phenotype and suggest a potential role for TEs in influencing phenotypic variations in rice that impact agronomic traits. | Haidong Yan David C.Haak Song Li Linkai Huang Aureliano Bombarely | 2022 | Plant Communications2022，3，3： | 0 |
| 12 | 西瓜基因组框架图谱绘制与20份代表性资源重测序研究显示文摘目的与意义:西瓜是一种重要的葫芦科作物,占全世界蔬菜生产面积的7%.经过长期人工选育,西瓜遗传多样性变的十分狭窄,已成为西瓜品种改良的瓶颈.本研究以东亚类型高品质西瓜品种‘97103’为材料进行西瓜全基因组序列分析,并开展20份代表性西瓜资源的基因组重测序分析,以明确西瓜基因组结构和进化历程,阐明果实品质和维管束信号传导等重要生物学过程的分子机制. | 郭绍贵(编译) 许勇(编译) 张建国 孙宏贺 Jerome Salse William JLucas 张海英 Yi Zheng 毛林勇 任毅 王志文 闵久梦 郭晓森 Florent Murat Byung-Kook Ham 张召亮 高山 黄明云 徐益民 钟思林 Aureliano Bombarely Lukas A Mueller 赵泓 何洪巨 张岩 张忠华 黄三文 谭涛 庞尔丽 林魁 胡群 匡汉辉 倪培相 王博 刘景安 孔秋生 侯文菊 邹小花 江姣 宫国义 Kathrin Klee Heiko Schoof 黄莹 胡雪松 董珊珊 梁德全 王娟 吴奎 夏阳 赵翔 郑泽群 邢淼 梁新明 黄邦清 吕添 王军一 尹烨 伊鸿平 李瑞强 吴明珠 Amnon Levil 张兴平 James J Giovannoni 王俊 李云伏 费章君 | 2019 | 中国瓜菜2019，32，8： | 0 |
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