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| 1 | A Robust CRISPR/Cas9 System for Convenient, High-Efficiency Multiplex Genome Editing in Monocot and Dicot Plants显示文摘CRISPR/Cas9 染色体指向系统被用于许多种类。然而,为植物报导的 mostCRISPR/Cas9 系统能仅仅修改一个或一些指向地点。这里,我们报导一个柔韧的 CRISPR/Cas9 向量系统,利用植物 codon 优化了 Cas9 基因,为方便、高效率的复合染色体在 monocot 和 dicot 植物编辑。我们设计了基于 PCR 的过程很快产生多重 sgRNA 表达式盒子,它能在一个轮由金门结扎或吉布森汇编克隆被装配进二进制 CRISPR/Cas9 向量。与这个系统,我们与 85.4% 变化评估的一般水准在米饭编辑了 46 个目标地点,主要在 biallelic 和同型结合的地位。我们推想在米饭的大约 16% 同型结合的变化通过相应基于再结合的修理跟随的非相应的加入结束的机制被产生。我们也获得了一致 biallelic,在 Arabidopsis T 1 植物的异质接合、同型结合、妄想的变化。在米饭和 Arabidopsis 的指向的变化是可继承的。我们在 T 0 米饭和 T 1 由同时的指向的 Arabidopsis 植物多重(多达八) 一个基因家庭,在一条 biosynthetic 小径的多重基因,或在单个基因的多重地点的成员。这个系统为为基本研究和基因改进在植物学习多重基因和基因家庭的功能提供了一个万用的工具箱。 | Xingliang Ma Qunyu Zhang Qinlong Zhu Wei Liu Yan Chen Rong Qiu Bin Wang Zhongfang Yang Heying Li Yuru Lin Yongyao Xie Rongxin Shen Shuifu Chen Zhi Wang Yuanling Chen Jingxin Guo Letian Chen Xiucai Zhao Zhicheng Dong Yao-Guang Liu | 2015 | Molecular Plant2015，8，8： | 272 |
| 2 | CRISPR-GE: A Convenient Software Toolkit for CRISPR-Based Genome Editing显示文摘 | Xie, Xianrong Ma, Xingliang Zhu, Qinlong Zeng, Dongchang Li, Gousi Liu, Yao-Guang | 2017 | Molecular Plant2017，10，9： | 67 |
| 3 | XA23 Is an Executor R Protein and Confers Broad-Spectrum Disease Resistance in Rice显示文摘 | Chunlian Wang Xiaoping Zhang Yinglun Fan Ying Gao Qinlong Zhu Chongke Zheng Tengfei Qin Yanqiang Li Jinying Che Mingwei Zhang Bing Yang Yaoguang Liu Kaijun Zhao | 2015 | Molecular Plant2015，8，2： | 55 |
| 4 | Development of "Purple Endosperm Rice" by Engineering Anthocyanin Biosynthesis in the Endosperm with a High-Efficiency Transgene Stacking System显示文摘Anthocyanins 在主食庄稼的 anthocyanin 生合成的高抗氧化剂活动,和工程例如米饭(Oryza sativa L.) ,能为改进人的健康提供支持健康的食物。然而,为 biofortification 设计新陈代谢的小径仍然保持困难,并且因为它的 biosynthetic 小径的复杂基因规章的网络,在米饭内乳设计 anthocyanin 生产的以前的尝试失败了。在这研究,我们为叠的 transgene 开发了一个高效率的向量系统并且使用了它在米饭内乳设计 anthocyanin 生合成。我们做了包含内乳特定的倡导者驾驶的八 anthocyanin 相关的基因(从从薄荷科植物的玉米和六结构的基因 ?的二规章的基因) 的构造,加为标记切除的一个可选的标记和基因。有这构造的米饭的转变产生了新奇 biofortified germplasm 紫色内乳瑞斯(用汉语的叫的 Zijingmi ) ,它在内乳有高 anthocyanin 内容和抗氧化剂活动。这 anthocyanin 生产源于 transgenes 和产生激活的表示(或改进) 13 内长的 anthocyanin 生合成基因的表示,那是 silenced 或在野类型的米饭内乳在底层表示。这研究为叠的 transgene 提供一个有效、万用的工具箱并且为一条复杂生物小径的成功的工程表明它的使用,建议为在工厂的农学的特点的合成生物学和改进的这个工具箱的潜在的用途。 | Qinlong Zhu Suize Yu Dongchang Zeng Hongmei Liu Huicong Wang Zhongtang Yang Xianrong Xie Rongxin Shen Jiantao Tan Heying Li Xiucai Zhao Qunyu Zhang Yuanling Chen Jingxing Guo Letian Chen Yao-Guang Liu | 2017 | Molecular Plant2017，10，7： | 47 |
| 5 | From Golden Rice to aSTARice:Bioengineering Astaxanthin Biosynthesis in Rice Endosperm显示文摘Carotenoids are important phytonutrients with antioxidant properties,and are widely used in foods and feedstuffs as Supplements.Astaxanthin,a red-colored ketocarotenoid,has strong antioxidant activity and thus can benefit human health.However,astaxanthin is not produced in most higher plants.Here we report the bioengineering of astaxanthin biosynthesis in rice endosperm by introducing four synthetic genes,sZmPSY1,sPaCrtl,sCrBKT,and sHpBHY,which encode the enzymes phytoene synthase,phytoene desaturase,β-carotene ketolase,and β-carotene hydroxylase,respectively.Transgneic overexpression of two (sZmPSY1 and sPaCrtl),three (sZmPSY1,sPaCrtl and sCrBKT),and all these four genes driven by rice endosperm-specific promoters established the Carotenoid/ketocarotenoid/astaxanthin biosynthetic pathways in the endosperm and thus resulted in various types of germplasm,from the yellow-grained β-caro- tene-enriched Golden Rice to orange-red-grained Canthaxanthin Rice and Astaxanthin Rice,respectively. Grains Of Astaxanthin Rice were enriched with astaxanthin in the endosperm and had higher antioxidant activity.These results proved that introduction of a minimal set of four transgenes enables de novo biosynthesis of astaxanthin in therice endosperm.This work provides a Successful example for synthetic biology in plants and biofortification in crops;the biofortified rice products generated by this study could be consumed as health-promoting foods and processed tO produce dietary supplements. | Qinlong Zhu Dongchang Zeng Suize Yu Chaojun Cui Jiamin Li Heying Li Junyu Chen Runzhao Zhang Xiucai Zhao Letian Chen Yao-Guang Liu | 2018 | Molecular Plant2018，11，12： | 35 |
| 6 | DRISPR/Cas9 Platforms for Genome Editing in Plants: Developments and Applications显示文摘 | Xingliang Ma Qinlong Zhu Yuanling Ghen Yao-Guang Liu | 2016 | Molecular Plant2016，9，7： | 39 |
| 7 | Targeted Genome Editing in Genes and cis- Regulatory Regions Improves Qualitative and Quantitative Traits in Crops显示文摘 | Xitao Li Yongyao Xie Qinlong Zhu Yao-Guang Liu | 2017 | Molecular Plant2017，10，11： | 11 |
| 8 | Neoproterozoic sedimentary facies and glacial periods in the southwest of Tarim Block显示文摘Based on the analysis of sedimentary facies and chemical index of alteration(CIA) in Nanhua and Ediacaran Systems in the southwest of Tarim Block,some features of glacial records in Neoproterozoic become more clear.Six sedimentary facies have been divided in the study area,including alluvial fan facies,lacustrine facies,glacial facies,littoral facies,neritic facies,and lagoonal facies,showing that this area underwent a process from continent to marine,with mainly littoral and neritic sedimentation.Two cold events have been recognized by analysis of CIA values in the study area,called Bolong and Yutang glaciation,respectively.They present as thick-layer tillite deposition in the Bolong Formation and thin-layer tillite deposition in the Yutang Formation,respectively.The Bolong glacial period in the study area can be correlated to the Yulmeinak glacial period in Aksu area,Tereeken glacial period in Qurugtagh area,and the Nantuo glacial period in South China,which is equivalent to the universally acknowledged Marinoan glacial period.The Yutang glacial period can be correlated to the Hankalchough glacial period in Qurugtagh,which is equivalent to Gaskers glaciation in Newfoundland. | TONG QinLong WEI Wei XU Bei | 2013 | Science China Earth Sciences2013，56，6： | 9 |
| 9 | EABDS: Attribute-Based Secure Data Sharing with Efficient Revocation in Cloud Computing显示文摘Ciphertext-policy attribute-based encryption(CP-ABE) is becoming a promising solution to guarantee data security in cloud computing. In this paper,we present an attribute-based secure data sharing scheme with Efficient revocation(EABDS) in cloud computing.Our scheme first encrypts data with Data encryption key(DEK) using symmetric encryption and then encrypts DEK based on CP-ABE, which guarantees the data confidentiality and achieves fine-grained access control. In order to solve the key escrow problem in current attribute based data sharing schemes, our scheme adopts additively homomorphic encryption to generate attribute secret keys of users by attribute authority in cooperation with key server, which prevents attribute authority from accessing the data by generating attribute secret keys alone.Our scheme presents an immediate attribute revocation method that achieves both forward and backward security.The computation overhead of user is also reduced by delegating most of the decryption operations to the key server.The security and performance analysis results show that our scheme is more secure and efficient. | HUANG Qinlong MA Zhaofeng YANG Yixian FU Jingyi NIU Xinxin | 2015 | Chinese Journal of Electronics2015，24，4： | 8 |
| 10 | A modified high-efficiency thermal asymmetric interlaced PCR method for amplifying long unknown flanking sequences显示文摘Rapid and efficient isolation of unknown flanking DNA sequences adjacent to known regions is important for molecular biology research.For this purpose,several PCR-based methods have been reported,including inverse PCR(Uchiyama and Watanabe,2006),ligation-mediated PCR(Yan et al.,2003;Ballester et al.,2005;Wang et al.,2007;Trinh et al.,2012)and randomly primed PCR(Liu and Whittier,1995;Liu et al.,1995;Antal et al. | Jiantao Tan Qi Gong Suize Yu Yuke Hou Dongchang Zeng Qinlong Zhu Yao-Guang Liu | 2019 | Journal of Genetics and Genomics2019，46，7： | 7 |
| 11 | An effective strategy to establish a male sterility mutant mini-library by CRISPR/Cas9-mediated knockout of anther-specific genes in rice显示文摘Male sterility(MS),characterized by functional defects in male organs or gametes,is an important agronomic trait for hybrid seed production,especially for self-pollinated crops such as rice(Oryza sativa L)(Chen and Liu,2014).Spontaneous MS mutants are rare and difficult to maintain in nature,thus limiting basicresearch and breeding.Artificial mutants are typically generated by physical,chemical,or biological mutagenesis(Wei et al,2013).Recently developed genome editing systems such as CRISPR/Cas9 allow efficient and timesaving knockout of endogenous genes at specific sites(Smith et al,2000;Moscou and Bogdanove,2009;Gasiunas et al.,2012). | Kun Ma Jingluan Han Yu Hao Zhongfang Yang Junyu Chen Yao-Guang Liu Qinlong Zhu Letian Chen | 2019 | Journal of Genetics and Genomics2019，46，5： | 6 |
| 12 | A novel CCCH-type zinc finger protein SAW1 activates OsGA20ox3 to regulate gibberellin homeostasis and anther development in rice显示文摘Male sterility is a prerequisite for hybrid seed production.The phytohormone gibberellin(GA)is in-volved in regulating male reproductive development,but the mechanism underlying GA homeostasis in anther development remains less understood.Here,we report the isolation and characterization of a new positive regulator of GA homeostasis,swollen anther wall 1(SAW1),for anther development in rice(Oryza sativa L.).Rice plants carrying the recessive mutant allele saw1 produces abnormal anthers with swollen anther wall and aborted pollen.Clustered regularly interspaced short palindromic repeats(CRISPR)/CRIPSR-associated protein 9-mediated knockout of SAW1 in rice generated similar male sterile plants.SAW1 encodes a novel nucleus-localizing CCCH-tandem zinc finger protein,and this protein could directly bind to the promoter region of the GA synthesis gene OsGA20ox3 to induce its anther-specific expression.In the saw1 anther,the significantly decreased OsGA20ox3 expression resulted in lower bio-active GA content,which in turn caused the lower expression of the GA-inducible anther-regulator gene OsGAMYB.Thus,our results disclose the mechanism of the SAW1-GA20ox3-GAMYB pathway in controlling rice anther development,and provide a new target gene for the rapid generation of male sterile lines by genome editing for hybrid breeding. | Bin Wang Ruiqiu Fang Faming Chen Jingluan Han Yao-Guang Liu Letian Chen Qinlong Zhu | 2020 | Journal of Integrative Plant Biology2020，62，10： | 5 |
| 13 | PhieCBEs:Plant High-Efficiency Cytidine Base Editors with Expanded Target Range显示文摘Clustered regularly interspaced short palindromic repeats(CRISPR)/CRISPR-associated protein 9(Cas9)-mediated genome editing can efficiently produce gene-knockout mutants.On the other hand,CRISPR/Cas-derived base editors offer the ability to induce precise nucleotide substitutions(Komor et al.,2016).Cytidine base editors(CBEs)consist of a cytidine deaminase fused with a Cas9-nickase variant(Cas9n,with a D10A substitu-tion)and can achieve site-specific C-to-T substitution.Similarly,adenine base editors use an adenine deaminase forA-to-G substi-tution.These systems have been used in various organisms(Mishra et al.,2019).However,the Cas9 complex requires target sites containing NGG protospacer adjacent motifs(PAMs),thus restricting selection of potential targets.A number of CBEs have been developed using Cas9 variants(mostly Cas9n),cytidine deaminases(such as rAPOBEC1 and PmCDA1),and uracil glycosylase inhibitor(UGI)domains.These CBEs of the first generation(BE1,rAPOBEC1-dCas9),second generation(BE2,rAPOBEC1-dCas9-UGI),and third generation(BE3,rAPOBEC1-Cas9n-UGI)have moderate editing efficiencies in mammalians(Komor etal.,2016). | Dongchang Zeng Taoli Liu Jiantao Tan Yaling Zhang Zhiye Zheng Bin Wang Degui Zhou Xianrong Xie Menghui Guo Yao-Guang Liu Qinlong Zhu | 2020 | Molecular Plant2020，13，12： | 5 |
| 14 | Shortened snRNA promoters for efficient CRISPR/Cas-based multiplex genome editing in monocot plants显示文摘Dear Editor,CRISPR(clustered regularly interspaced short palindromic repeats)/Cas genome editing is a powerful tool for introducing specific mutations in organisms including plants.The system is composed of a nuclease such as Cas9 or Cas12a and an engineered single-guide RNA(sgRNA)incorporating a target sequence(Li et al.,2019).A Cas9/sgRNA complex recognizes its target site in the genome,resulting in a mutation at that site. | Yu Hao Wubei Zong Dongchang Zeng Jingluan Han Shuifu Chen Jianian Tang Zhe Zhao Xiaojuan Li Kun Ma Xianrong Xie Qinlong Zhu Yuanling Chen Xiucai Zhao Jingxin Guo Yao-Guang Liu | 2020 | Science China(Life Sciences)2020，63，6： | 4 |
| 15 | Preparation of Ce-TiO_2/carbon aerogel electrode and its performance in degradation of 4-chlorophenol显示文摘Ce-TiO_2/CA(carbon aerogel) electrode was prepared by sol impregnation approach. The XRD(X-ray diffraction) and Raman spectra reveal that the TiO2 is anatase. The UV-vis diffuse reflectance spectra show that the optical absorption edge for Ce-TiO_2/CA is red-shifted to 535 nm compared with TiO_2/CA. Under visible light irradiation, the photocurrent density increment on Ce-TiO_2/CA is 75 times that on Ce-TiO_2/FTO(fluorine-doped tin oxide). The electrochemical impedance spectroscopy reveals that the conductivity of CeTiO_2/CA is much better than the Ce-TiO_2/FTO. Furthermore, the Ce-TiO_2/CA can be used to the highest electrosorptive photodegradation for 4-chlorophenol wastewater degradation, which is ascribed predominantly to the efficient reduction of electron-hole pair recombination in the photocatalysts. | Yabo Wang Zihong Pan Dezhi Qin Suzhen Bai Qinlong Peng | 2018 | Journal of Rare Earths2018，36，4： | 4 |
| 16 | Attribute Based DRM Scheme with Dynamic Usage Control in Cloud Computing显示文摘In order to achieve fine-grained access control in cloud computing,existing digital rights management(DRM) schemes adopt attribute-based encryption as the main encryption primitive.However,these schemes suffer from inefficiency and cannot support dynamic updating of usage rights stored in the cloud.In this paper,we propose a novel DRM scheme with secure key management and dynamic usage control in cloud computing.We present a secure key management mechanism based on attribute-based encryption and proxy re-encryption.Only the users whose attributes satisfy the access policy of the encrypted content and who have effective usage rights can be able to recover the content encryption key and further decrypt the content.The attribute based mechanism allows the content provider to selectively provide fine-grained access control of contents among a set of users,and also enables the license server to implement immediate attribute and user revocation.Moreover,our scheme supports privacy-preserving dynamic usage control based on additive homomorphic encryption,which allows the license server in the cloud to update the users' usage rights dynamically without disclosing the plaintext.Extensive analytical results indicate that our proposed scheme is secure and efficient. | HUANG Qinlong | 2014 | China Communications2014，11，4： | 3 |
| 17 | Secure Data Sharing and Retrieval Using Attribute-Based Encryption in Cloud-Based OSNs显示文摘The Online social networks(OSNs) offer attractive means for social interactions and data sharing,but also raise a number of security and privacy issues. Since the OSNs service provider is always semi-trusted, current solutions propose to encrypt data before sharing. However,data encryption causes a lot of inconveniences and large overheads for data dissemination and data retrieval. In this paper, we propose a secure data sharing and retrieval scheme in cloud-based OSNs. Based on ciphertext-policy attribute-based encryption, our scheme achieves multiparty access control, which allows data owners to outsource encrypted data to the OSNs service provider for sharing,and enables data disseminators to disseminate the data owners' data by customizing new access policy. Our scheme also provides searchable encryption scheme to support fast searches in massive amount of encrypted data from both data owners and data disseminators. Further, our scheme preserves the privacy of data owners and data retrievers during the data sharing and retrieval processes. In addition, the computation overhead of data retrievers is reduced by delegating most of the decryption operations to the OSNs service provider. The security and performance analysis results indicate that our scheme is secure and privacy-preserving. | HUANG Qinlong MA Zhaofeng YANG Yixian FU Jingyi NIU Xinxin | 2014 | Chinese Journal of Electronics2014，23，3： | 3 |
| 18 | The Intronic cis Element SE1 Recruits trans-Acting Repressor Complexes to Repress the Expression of ELONGATED UPPERMOST INTERNODE1 in Rice显示文摘 | Yongyao Xie Yaling Zhang Jingluan Han Jikai Luo Gousi Li Jianle Huang Haibin WU Qingwei Tian Qinlong Zhu Yuanling Chen Yoji Kawano Yao-Guang Liu Letian Chen | 2018 | Molecular Plant2018，11，5： | 3 |
| 19 | Microwave–hydrothermal synthesis of fluorescent carbon dots from graphite oxide显示文摘 | Qinlong Wang Huzhi Zheng Yijuan Long Lingyan Zhang Mei Gao Wenjun Bai | 2011 | Carbon2011，，9： | 2 |
| 20 | A risk-prediction score for colorectal lesions on 12,628 participants at high risk of colorectal cancer显示文摘Background The uptake of colonoscopy is low in individuals at risk of colorectal cancer(CRC).We constructed a riskprediction score(RPS)in a large community-based sample at high risk of CRC to enable more accurate risk stratification and to motivate and increase the uptake rate of colonoscopy.Methods A total of 12,628 participants classified as high-risk according to positivity of immunochemical fecal occult blood tests or High-Risk Factor Questionnaire underwent colonoscopy.Logistic regression was used to derive a RPS and analysed the associations of the RPS with colorectal lesions,giving odds ratios(ORs)and 95%confidence intervals(CIs).Results Of the participants,men(OR=1.73,95%CI=1.58–1.90),older age(≥65 years;1.41,1.31–1.53),higher body mass index(≥28 kg/m^(2);1.22,1.07–1.39),ever smoking(1.47,1.31–1.65),and weekly alcohol use(1.28,1.09–1.52)were associated with a higher risk of colorectal lesions.We assigned 1 point to each of the above five risk factors and derived a RPS ranging from 0 to 5,with a higher score indicating a higher risk.Compared with a RPS of 0,a RPS of 1,2,3,and 4–5 showed a higher risk of colorectal lesions,with the OR(95%CI)being 1.50(1.37–1.63),2.34(2.12–2.59),3.58(3.13–4.10),and 3.91(3.00–5.10),respectively.The area under the receiver-operating characteristic curve of RPS in predicting colorectal lesions was 0.62.Conclusions Participants with an increase in the RPS of≥1 point had a significantly higher risk of colorectal lesions,suggesting the urgency for measuring colonoscopy in this very high-risk group.High-risk strategies incorporating RPS may be employed to achieve a higher colonoscopy-uptake rate. | Lixin Liang Yingru Liang Ke Li Pengzhe Qin Guozhen Lin Yan Li Huan Xu Suixiang Wang Qinlong Jing Boheng Liang Lin Xu | 2022 | Gastroenterology Report2022，10，1： | 2 |
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