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| 1 | GSA:Genome Sequence Archive显示文摘With the rapid development of sequencing technologies towards higher throughput and lower cost, sequence data are generated at an unprecedentedly explosive rate. To provide an efficient and easy-to-use platform for managing huge sequence data, here we present Genome Sequence Archive(GSA; http://bigd.big.ac.cn/gsa or http://gsa.big.ac.cn), a data repository for archiving raw sequence data. In compliance with data standards and structures of the International Nucleotide Sequence Database Collaboration(INSDC), GSA adopts four data objects(Bio Project, Bio Sample,Experiment, and Run) for data organization, accepts raw sequence reads produced by a variety of sequencing platforms, stores both sequence reads and metadata submitted from all over the world,and makes all these data publicly available to worldwide scientific communities. In the era of big data, GSA is not only an important complement to existing INSDC members by alleviating the increasing burdens of handling sequence data deluge, but also takes the significant responsibility for global big data archive and provides free unrestricted access to all publicly available data in support of research activities throughout the world. | Yanqing Wang Fuhai Song Junwei Zhu Sisi Zhang Yadong Yang Tingting Chen Bixia Tang Lili Dong Nan Ding Qian Zhang Zhouxian Bai Xunong Dong Huanxin Chen Mingyuan Sun Shuang Zhai Yubin Sun Lei Yu Li Lan Jingfa Xiao Xiangdong Fang Hongxing Lei Zhang Zhang Wenming Zhao | 2017 | Genomics, Proteomics & Bioinformatics2017,15,1: | 13 |
| 2 | Qingnaoyizhi decoction suppresses the formation of glial fibrillary acidic protein-positive cells in cultured neural stem cells by inhibiting the Janus kinase 2/signal transducer and activator of transcription 3 signaling pathway显示文摘OBJECTIVE: Inactivation of the Janus kinase 2(JAK2)/signal transducer and activator of transcription 3(STAT3) signaling axis plays a crucial role in determining the fate of neural stem cells(NSCs).Qingnaoyizhi decoction(QNYZD) has been used for the treatment of vascular dementia and has shown to improve synaptic remodeling. The aim of this study was to evaluate the effect of cerebrospinal fluid(CSF) containing QNYZD(CSF-QNYZD) on the differentiation of cultured NSCs and the involvement of the JAK2/STAT3 pathway.METHODS: The protein expression levels of glial fibrillary acidic protein(GFAP), tubulin, drosophila mothers against decapentaplegic protein(SMAD-1), STAT3, and phosphorylated-STAT3 were detected by western immunoblot analysis in the groups: control, CSF, JAK/STAT inhibitor(AG490),CSF-QNYZD, and CSF-XDZ(CSF-Xidezhen). The differentiation of NSCs was determined by immunofluorescence staining. The proliferation of NSCs was measured using the Cell Counting Kit-8 proliferation assay.RESULTS: Compared with the control group,CSF-QNYZD and AG490 significantly increased the number and expression of tubulin-positive cells, reduced the number and expression of GFAP-positive cells, and down-regulated the expression of p-STAT3. However, CSF-QNYZD also decreased the expression of SMAD-1 and STAT3.CONCLUSION: Enhanced neuronal differentiation may be associated with the down-regulation of glial differentiation instead of promoting proliferationin treated NSCs. Furthermore, QNYZD may play a direct role in suppressing the formation of GFAP-positive cells and enhancing neuronal differentiation by inhibiting JAK2/STAT3 activation. Overall, these results provide insights into the possible mechanism underlying QNYZD-mediated neurogenesis. | Wu Yanqing Jing Zhiwei Qin Xiude Zhou Zhen Wang Kai Song Wanshan Wang Xueyan Hou Mengmeng Zhang Yulian Kang Liyuan | 2015 | Journal of Traditional Chinese Medicine2015,35,1: | 11 |
| 3 | Multifunctional metasurfaces enabled by simultaneous and independent control of phase and amplitude for orthogonal polarization states显示文摘Monochromatic light can be characterized by its three fun dame ntal properties:amplitude,phase,and polarization.In this work,we propose a versatile,transmission-mode all-dielectric metasurface platform that can independently manipulate the phase and amplitude for two orthogonal states of polarization in the visible frequency range.For proof-o仁concept experimental demonstration,various single-layer metasurfaces composed of subwavelength-spaced titanium-dioxide nanopillars are designed,fabricated,and characterized to exhibit the ability of polarization-switchable multidimensional light-field manipulation,including polarization-switchable grayscale nanoprinting,nonuniform cylindrical lensing,and complex-amplitude holography.We envision the metasurface platform dem on strated here to open new possibilities toward creating compact multifunctional optical devices for applications in polarization optics,information encoding,optical data storage,and security. | Mingze Liu Wenqi Zhu Pengcheng Huo Lei Feng Maowen Song Cheng Zhang Lu Chen Henri JLezec Yanqing Lu Amit Agrawal Ting Xu | 2021 | Light(Science & Applications)2021,10,6: | 8 |
| 4 | Integrating a weighted-average method into the random walk framework to generate individual friend recommendations显示文摘Friend recommendation is a fundamental service in both social networks and practical applications,and is influenced by user behaviors such as interactions, interests, and activities. In this study, we first conduct in-depth investigations on factors that affect recommendation results. Next, we design Friend++, a hybrid multi-individual recommendation model that integrates a weighted average method(WAM) into the random walk(RW) framework by seamlessly employing social ties, behavior context, and personal information. In Friend++, the first plus signifies recommending a new friend through network features, while the second plus stands for using node features. To verify our method, we conduct experiments on three social datasets crawled from the Sina microblog system(Weibo). Experimental results show that the proposed method significantly outperforms six baseline methods in terms of recall, precision, F1-measure, and MAP. As a final step, we describe a case study that demonstrates the scalability and universality of our method. Through discussion, we reach a meaningful conclusion: although common interests are more important than user activities in making recommendations, user interactions may be the most important factor in finding the most appropriate potential friends. | Jibing GONG Xiaoxia GAO Hong CHENG Jihui LIU Yanqing SONG Mantang ZHANG Yi ZHAO | 2017 | Science China(Information Sciences)2017,60,11: | 7 |
| 5 | Evaluation of oxygen transfer parameters of fine-bubble aeration system in plug flow aeration tank of wastewater treatment plant显示文摘Knowledge of the oxygen mass transfer of aerators under operational conditions in a full-scale wastewater treatment plant (WWTP) is meaningful for the optimization of WWTP, however, scarce to best of our knowledge. Through analyzing a plug flow aeration tank in the Lucun WWTP, in Wuxi, China, the oxygenation capacity of fine-bubble aerators under process conditions have been measured in- situ using the off-gas method and the non-steady-state method. The off-gas method demonstrated that the aerators in different corridors in the aeration tank of WWTP had significantly different oxygen transfer performance; furthermore, the aerators in the same corridor shared almost equal oxygen transfer performance over the course of a day. Results measured by the two methods showed that the oxygen transfer performance of fine-bubble aerators in the aeration tank decreased dramatically compared with that in the clean water. The loss of oxygen transfer coefficient was over 50% under low-aeration conditions (aeration amount < 0.67 Nm 3 /hr). However, as the aeration amount reached 0.96 Nm 3 /hr, the discrepancy of oxygen transfer between the process condition and clean water was negligible. The analysis also indicated that the non-steady-state and off-gas methods resulted in comparable estimates of oxygen transfer parameters for the aerators under process conditions. | Xiaohong Zhou Yuanyuan Wu Hanchang Shi Yanqing Song | 2013 | Journal of Environmental Sciences2013,25,2: | 6 |
| 6 | Modulation of Guard Cell Turgor and Drought Folerance by a Peroxisomal Acetate-Malate Shunt显示文摘 | Huan Dong Ling Bai Yu Zhang Guozeng Zhang Yanqing Mao Lulu Min Fuyou Xiang Dongdong Qian Xiaohong Zhu Chun-Peng Song | 2018 | Molecular Plant2018,11,10: | 6 |
| 7 | Whole Genome Analyses of Chinese Population and De Novo Assembly of A Northern Han Genome显示文摘To unravel the genetic mechanisms of disease and physiological traits,it requires comprehensive sequencing analysis of large sample size in Chinese populations.Here,we report the primary results of the Chinese Academy of Sciences Precision Medicine Initiative(CASPMI)project launched by the Chinese Academy of Sciences,including the de novo assembly of a northern Han reference genome(NH1.0)and whole genome analyses of 597 healthy people coming from most areas in China.Given the two existing reference genomes for Han Chinese(YH and HX1)were both from the south,we constructed NH1.0,a new reference genome from a northern individual,by combining the sequencing strategies of PacBio,10×Genomics,and Bionano mapping.Using this integrated approach,we obtained an N50 scaffold size of 46.63 Mb for the NH1.0 genome and performed a comparative genome analysis of NH1.0 with YH and HX1.In order to generate a genomic variation map of Chinese populations,we performed the whole-genome sequencing of 597 participants and identified 24.85 million(M)single nucleotide variants(SNVs),3.85 M small indels,and 106,382 structural variations.In the association analysis with collected phenotypes,we found that the T allele of rs1549293 in KAT8 significantly correlated with the waist circumference in northern Han males.Moreover,significant genetic diversity in MTHFR,TCN2,FADS1,and FADS2,which associate with circulating folate,vitamin B12,or lipid metabolism,was observed between northerners and southerners.Especially,for the homocysteine-increasing allele of rs1801133(MTHFR 677T),we hypothesize that there exists a “comfort”zone for a high frequency of 677T between latitudes of 35–45 degree North.Taken together,our results provide a high-quality northern Han reference genome and novel population-specific data sets of genetic variants for use in the personalized and precision medicine. | Zhenglin Du Liang Ma Hongzhu Qu Wei Chen Bing Zhang Xi Lu Weibo Zhai Xin Sheng Yongqiao Sun Wenjie Li Meng Lei Qiuhui Qi Na Yuan Shuo Shi Jingyao Zeng Jinyue Wang Yadong Yang Qi Liu Yaqiang Hong Lili Dong Zhewen Zhang Dong Zou Yanqing Wang Shuhui Song Fan Liu Xiangdong Fang Hua Chen Xin Liu Jingfa Xiao Changqing Zeng | 2019 | Genomics, Proteomics & Bioinformatics2019,17,3: | 4 |
| 8 | Interface effects on the electroluminescence spectra in amorphous-Si/silicon oxynitride multilayer structures显示文摘We report room-temperature electroluminescence (EL) from as-deposited amorphous-Si/silicon oxynitride multilayer structure prepared by plasma enhanced chemical vapor deposition. We prepared 8-period a-Si/SiOxNy multilayer with thickness of 4 nm both for the Si and SiOxNy sublayers. The EL spectral profile exhibits some obviously modulated features upon the barrier material. By adjusting the nitride/oxygen ratio in the barrier layer, the EL peak position can be tuned from 750 nm to 695 nm. From the result of the Raman and Fourier transform infrared results, the EL is attributed to the radiative recombination of electrons and holes in luminescent centers related to the interface. The different interface characteristics induce the shift of EL peak position. | WANG Xiang HUANG Rui SONG Chao SONG Jie GUO YanQing | 2012 | Science China(Physics,Mechanics & Astronomy)2012,55,7: | 3 |
| 9 | Submicrosecond electro-optical switching of one-dimensional soft photonic crystals显示文摘Soft photonic crystals are appealing due to their self-assembly ability,wide tunability,and multistimuli-responsiveness.However,their response time is relatively slow,ranging from milliseconds to minutes.Here,we report submicrosecond switching of chiral liquid crystals(LCs)with 1D photonic microstructures,where electric fields modify the orientational order of molecules and quench their fluctuations,rather than altering the orientation.Thus,the adjusted refractive indices result in a fast shift of the photonic bandgap,on the order of 100 ns,which is four orders of magnitude faster than conventional electro-optic switching in cholesterics.This work offers tremendous opportunities for soft photonic applications. | Lingling Ma Chaoyi Li Luyao Sun Zhenpeng Song Yanqing Lu Bingxiang Li | 2022 | Photonics Research2022,10,3: | 2 |
| 10 | Application of ultrasound irradiation for reactions of N-hydroxymethylation显示文摘 | Zhong Wujun Song Gonghua Peng Yanqing | 2000 | Synthetic Communications2000,30,20: | 1 |
| 11 | Assessment of sustainable energy potential of non-plantation biomass resources in China显示文摘 | Li Junfeng Hu Runqing Song Yanqing | 2005 | Biomass and Bioenergy2005,29,: | 1 |
| 12 | Characterization of Water Constituents Spectra Absorption in Chagan Lake of Jilin Province, Northeast China显示文摘Research on the optical characteristics of water color constituents in Chagan Lake of Jilin Province,Northeast China was carried out in order to investigate the variability of the spectra absorption parameters as inputs to bio-optical models and remote sensing algorithms for converting observed spectral signals into water quality information.Samples of total particulates,non-algal particles and colored dissolved organic matter (CDOM) were first prepared by quantitative filter technique (QFT) and then absorption coefficients of these color producing agents were determined by spectrophotometry.Spectral characteristics of absorption coefficients by total particulate matter,spectral specific absorption dependency on chlorophyll concentration (Chl-a) of phytoplankton,spectral absorption slopes variation for CDOM and non-algal particles and their corresponding reasons were examined and clarified over five months of 2009 and 2010 in this study.Results suggest that total particulate spectral absorption in Chagan Lake is mainly dominated by non-algal particles in most cases,but phytoplankton could be the dominant contributor when chlorophyll concentration is high (up to 84.48 mg/m3 in autumn 2010).The specific absorption coefficients of phytoplankton particulate (a*ph(λ)) dependency on Chl-a is significantly variable due to relative contributions of package effect and accessory pigments,and the parameters of power function are clearly biased on a long time span.The sources of variability in spectral absorption slopes of CDOM and non-algal particles are mainly attributed to the changing proportions of high molecular weight humic acids and mineral suspended sediments in waters,respectively. | WANG Yuandong LIU Dianwei SONG Kaishan DU Jia WANG Zongming ZHANG Bai TANG Xuguang LEI Xiaochun WU Yanqing | 2011 | Chinese Geographical Science2011,21,3: | 1 |
| 13 | Effect of GZO thickness and annealing temperature on the structural,electrical and optical properties of GZO/Ag/GZO sandwich films显示文摘 | SONG Shumei YANG Tianlin XIN Yanqing | 2010 | Current Appl Phys2010,10,2: | 1 |
| 14 | Solution phase parallel synthesis of 4-aminophenyl ethers using a carboxyl-functionalized ionic liquid as support 显示文摘 | Peng Yanqing Yi Fengping Song Gonghua | 2005 | Monatshefte fur Chemie2005,136,: | 1 |
| 15 | Resistivity response of coal under hydraulic fracturing with different injection rates:A laboratory study显示文摘Resistivity will have different response characteristics to the hydraulic fracture propagation process. In this work, a resistivity testing system for hydraulic fracturing specimens was established. Resistivity and acoustic emission(AE) information were jointly analysed to determine the dynamic response characteristics of resistivity during hydraulic fracture propagation. The results show that the water and fracture exert a competitive influence on the connection structure of the circuit, and there are two significant peak resistivity points in the curve, presenting a double peak therein. The peak resistivity data of the specimen with a larger fracture area are much different from the initial value. With the increase of the rate of injection, the range of variation of the highest value that can be reached with the specimen resistivity decreases. High resistivity rates or high resistivity fluctuations exhibit rapid a release of fracture energy. The fracture failure mode dominated by shear fractures makes the formation produce a “series+parallel” electrical connection structure;a calculation model of formation resistivity based on shear and tensile failure was proposed to characterize the proportion of different types of hydraulic fractures and elucidate the control effect of matrix resistivity on the electrical performance of the overall circuit structure. | Mingyang Song Quangui Li Qianting Hu Yanqing Wu Guanhua Ni Yangcheng Xu Yuebing Zhang Liangping Hu Jialin Shi Jichuan Liu Yize Deng | 2022 | International Journal of Mining Science and Technology2022,32,4: | 1 |
| 16 | Assessment of sustainable energy potential of non-plantation biomass resources in China显示文摘 | Li Junfeng Hu Runqing Song Yanqing | 2005 | Biomass and Bioenergy2005,29,: | 1 |
| 17 | Amino-functionalized Ionic Liquid as an Efficient and Recyclable Catalyst for Knoevenagel Reactions in Water显示文摘 | Yueqin Cai Yanqing Peng Gonghua Song | 2006 | Catalysis Letters (-)2006,,1: | 1 |
| 18 | Dramatically accelerated synthesis of β-aminoketones via aqueous Mannich reaction under combined microwave and ultrasound irradiation 显示文摘 | Yanqing Peng Ruiling Dou Gonghua Song | 2005 | Syrdett2005,14,: | 1 |
| 19 | The enhanced conductivity and stability of AZO thin films with a TiO 2 buffer layer显示文摘 | Tianlin Yang Shumei Song Yanhui Li Yanqing Xin Guiqiang Du Maoshui Lv Shenghao Han | 2012 | Physica B: Physics of Condensed Matter2012,,23: | 1 |
| 20 | Reusable Pd nanoparticles immobilized on functional ionic liquid co-poly- merized with styrene for Suzuki reactions in water-ethanol solu- tion显示文摘 | JIAYI WANG GONGHUA SONG YANQING PENG | 2011 | Tetrahedron Letters2011,52,13: | 1 |