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| 1 | The origin, diversification and adaptation of a major mangrove clade (Rhizophoreae) revealed by whole-genome sequencing显示文摘Mangroves invade some very marginal habitats for woody plants—at the interface between land and sea.Since mangroves anchor tropical coastal communities globally, their origin, diversification and adaptation are of scientific significance, particularly at a time of global climate change. In this study, a combination of single-molecule long reads and the more conventional short reads are generated from Rhizophora apiculata for the de novo assembly of its genome to a near chromosome level. The longest scaffold, N50 and N90 for the R. apiculata genome, are 13.3 Mb, 5.4 Mb and 1.0 Mb, respectively. Short reads for the genomes and transcriptomes of eight related species are also generated. We find that the ancestor of Rhizophoreae experienced a whole-genome duplication ~70 Myrs ago, which is followed rather quickly by colonization and species diversification. Mangroves exhibit pan-exome modifications of amino acid(AA) usage as well as unusual AA substitutions among closely related species. The usage and substitution of AAs, unique among plants surveyed, is correlated with the rapid evolution of proteins in mangroves. A small subset of these substitutions is associated with mangroves' highly specialized traits(vivipary and red bark) thought to be adaptive in the intertidal habitats. Despite the many adaptive features, mangroves are among the least genetically diverse plants, likely the result of continual habitat turnovers caused by repeated rises and falls of sea level in the geologically recent past. Mangrove genomes thus inform about their past evolutionary success as well as portend a possibly difficult future. | Shaohua Xu Ziwen He Zhang Zhang Zixiao Guo Wuxia Guo Haomin Lyu Jianfang Li Ming Yang Zhenglin Du Yelin Huang Renchao Zhou Cairong Zhong David E. Boufford Manuel Lerdau Chung-I Wu Norman C. Duke Suhua Shi | 2017 | National Science Review2017，4，5： | 7 |
| 2 | An Improvement to Multiple Criteria ABC Inventory Classification Using Shannon Entropy显示文摘This paper extends the Ng-model [Ng, 2007] for multiple criteria ABC inventory classification based upon Shannon entropy. The proposed approach determines the common weights associated with all criteria importance rankings, and provides a comprehensive scoring scheme by aggregating all rankings of the criteria importance. A numerical illustration is presented to compare the model with previous studies. | ZHENG Shanshan FU Yelin LAI Kin Keung LIANG Liang | 2017 | Journal of Systems Science & Complexity2017，30，4： | 4 |
| 3 | f-Harmonic Morphisms Between Riemannian Manifolds显示文摘f-Harmonic maps were first introduced and studied by Lichnerowicz in 1970.In this paper,the author studies a subclass of f-harmonic maps called f-harmonic morphisms which pull back local harmonic functions to local f-harmonic functions.The author proves that a map between Riemannian manifolds is an f-harmonic morphism if and only if it is a horizontally weakly conformal f-harmonic map.This generalizes the well-known characterization for harmonic morphisms.Some properties and many examples as well as some non-existence of f-harmonic morphisms are given.The author also studies the f-harmonicity of conformal immersions. | Yelin OU | 2014 | Chinese Annals of Mathematics,Series B2014，35，2： | 4 |
| 4 | Testing relative evolutionary rates and estimating divergence times among six genera of Rhizophoraceae using cpDNA and nrDNA sequences显示文摘The molecular phylogenetic trees of 10 species representing 6 genera of the family Rhizophoraceae have been constructed using the sequences of chloroplast genes ma/K and rbcL as well as the ITS regions of nuclear ribosomal DMA. Relative-rate tests between lineages in these phylogenetic trees have been performed. On the basis of the results of the relative-rate tests and related molecular evolutionary rate data, the divergence times between the lineages are estimated as follows: ( i) the first divergence time in these genera is 132.25 million years ago (mya); (ii) the average divergence time between two tribes, i.e. inland Legnotideae (except Carallia brachiata) and mangrove Rhizophoreae, is 64.13 mya; and (iii) the average divergence time between two inland species, C. garciniaefolia and C. pectinifolia, is 19.92 mya. | ZHONG Yang SHI Suhua TANG Xianhua HUANG Yelin TAN Fengxiao ZHANG Xiaoyan | 2000 | Chinese Science Bulletin2000，45，11： | 3 |
| 5 | A Novel Ratio-Based Parallel DEA Approach for Evaluating the Energy and Environmental Performance of Chinese Transportation Sectors显示文摘As a high-energy-consumption and high-CO2-emission industry in China,the transportation sector has been under increasing pressure to improve its performance.This paper develops a novel parallel DEA approach to measure Chinese transportation sector's energy and environmental performance (EEP) over all possible weights,which is to avoid the risk of using the extreme or the most favorable weights in performance evaluation.In our method,the transportation sector is consisted of two parallel subsystems (passenger transportation and freight transportation) with shared inputs and undesirable shared outputs.All possible weights are considered in the EEP evaluation,then the EEP of a transportation sector is represented by a ranking interval.Finally,the proposed approach is applied to the transportation sectors in 30 Chinese provinces.Results show that the best and the worst ranking of most provinces vary greatly.Besides,the EEP of most provinces is hard to dominate others strictly,but the general tendency is the EEP of eastern provinces better than western provinces.Furthermore,the EEP difference of some adjacent provinces with similar features is distinct.These findings are not all the same as previous studies,which verifies the necessity of considering all possible weights in performance evaluation.Therefore,our method provides a new point of view in performance evaluation and can give more robust results for decision makers. | Xiyang Lei Lin Li Xuefei Zhang Qianzhi Dai Yelin Fu | 2019 | Journal of Systems Science and Systems Engineering2019，28，5： | 3 |
| 6 | TLR3 activation induces S100A7 to regulate keratinocyte differentiation after skin injury显示文摘Human S100A7 (psoriasin) is highly expressed in psoriasis and other inflammatory diseases; however, the function of S100A7 in wound repair remains largely unknown. Here we demonstrated that skin injury increased the expression of S100A7. Damaged cells from wounded skin induced the expression of S100A7 via the activation of Toll-like receptor 3 (TLR3) followed by the activation of p38 MAPK. S100A7, in turn, acted on keratinocytes to induce the expression of terminal differentiation marker gene loricrin through the activation of p38 MAPK and caspase-1. The differentiation of keratinocytes induced by S100A7 resulted in skin stratification, thus efficiently promoting wound closure. Taken together, our results demonstrate that the activation of TLR3 accelerates wound closure via the induction of S100A7 to induce keratinocyte differentiation. These findings also provide new insights into the development of different forms of treatment with skin wounds. | Hu Lei Yue Wang Tian Zhang Leilei Chang Yelin Wu Yuping Lai | 2017 | Science China(Life Sciences)2017，60，2： | 3 |
| 7 | Characterization of viromes within mosquito species in China显示文摘Mosquitoes are vectors of multiple disease-causing agents that cause worldwide outbreaks of serious infectious diseases in both humans and animals. These arboviral agents include Dengue virus (DENV), Zika virus (ZIKV), chikungunya virus, yellow fever virus, Japanese encephalitis virus (JEV),and Rift Valley fever virus. Thus, mosquitoes are key to the study of viral origin, spread, and the epidemic tendency of these infectious diseases (Hall and Macdonald, 2016). | Jiang Du Fan Li Yelin Han Shihong Fu Bo Liu Nan Shao Haoxiang Su Weijia Zhang Dandan Zheng Wenwen Lei Jie Dong Lilian Sun Ying He Jianmin Wang Fan Yang Huanyu Wang Guodong Liang Zhiqiang Wu Qi Jin | 2020 | Science China(Life Sciences)2020，63，7： | 2 |
| 8 | Developing a risk assessment model for PPP projects in China — A fuzzy synthetic evaluation approach显示文摘 | Yelin Xu John F.Y. Yeung Albert P.C. Chan Daniel W.M. Chan Shou Qing Wang Yongjian Ke | 2010 | Automation in Construction2010，，7： | 2 |
| 9 | Simultaneous detection and characterization of toxigenic Clostridium difficile directly from clinical stool specimens显示文摘我们采用了结合的复合聚合酶链反应(PCR ) 指向六的毛状的电气泳动(mPCR-CE ) 在为 toxigenic C 的同时的察觉和描述的 tcdC 的 Clostridium 顽固基因,包括的 tpi, tcdA, tcdB, cdtA, cdtB,和删除。顽固直接从烘便的标本。mPCR-CE 每反应有 10 个形成殖民地的单位的察觉的限制没有与另外的相关细菌的基因跨反应。临床的确认在 354 上被执行连续地与怀疑的 C 从病人收集了凳子标本。顽固感染并且 45 孤立。结果与与 BD 最大 Cdiff,即时房间分析试金(RTCA ) ,和 mPCR-CE 相结合的一个参考标准相比。toxigenic C。顽固种类在 36 被检测孤立并且由 mPCR-CE 的 45 个凳子标本,它提供了 20.3% 的积极的率(81/399 ) 。mPCR-CE 有 97.2% 的特性和 96.0% 的敏感,它比 RTCA 高(x 2= 5.67, P = 0.017 ) 但是比 BD 最大 Cdiff 低(P = 0.245 ) 。在 45 紧张之中,(97.8%) 44 作为 non-ribotype 被决定 027 由 mPCR-CE,它充分被适合于 PCR ribotyping。尽管 ribotypes 017 (n = 8, 17.8%) , 001 (n = 6, 13.3%) ,并且 012 (n = 7, 15.6%) 在这个区域是占优势的, ribotype 027 重要遗传型习惯性地被监视。mPCR-CE 为 toxigenic C 的同时的察觉提供了一个其他的诊断工具。在凳子顽固、在 RT027 和 non-RT027 之间潜在地区分。 | Hanjiang Lai Chen Huang Jian Cai Julian Ye Jun She Yi Zheng Liqian Wang Yelin Wei Weijia Fang Xianjun Wang Yi-Wei Tang Yun Luo Dazhi Jin | 2018 | Frontiers of Medicine2018，12，2： | 2 |
| 10 | Resource Allocation in Public Healthcare: A Team-DEA Model显示文摘这份报纸联合队和数据包封分析(DEA ) 的理论设计机制最佳地在公共保健分配资源。在它的统治下面的一个法令的权威和公共医院作为一个队,其成员寻求在公共保健是公众的分享的机构的限制下面高效地操作被解释好。单个公共医院利用 DEA 最大化自己发薪,到对方公众医院的发薪不从外部效果掉落并且从而减去的队条件的题目由保健的公共供应创造了。产生 team-DEA 答案,它被显示是两个一个别地有效并且 team-satisficing 平衡并且以一个会聚的算法可计算出来,然后能被权威使用在公共保健决定资源的最佳的分配。一个盒子基于中国数据被介绍说明 team-DEA 模型准备好了的 operationalization 和计算。 | LAI Kin Keung CHEUNG Michael Tow FU Yelin | 2018 | Journal of Systems Science & Complexity2018，31，2： | 2 |
| 11 | Systematic identification of abundant A-to-I editing sites in the human transcriptome显示文摘 | Levanon E Y Eisenberg E Yelin R | 2004 | Nat Biotechnol2004，22，8： | 1 |
| 12 | Adaptive femtosecond pulse compression显示文摘 | Yelin D Meshulach D Silberberg Y | 1997 | Opt Lett1997，22，23： | 1 |
| 13 | Radiative atom-atom interactions in optically dense media:Quantum corrections to the Lorentz-Lorenz formula显示文摘 | FLEISCHHAUER M YELIN A F | 1999 | Physical Review A1999，59，3： | 1 |
| 14 | Perceived control of asthma:devel-opment and validation of a questionnaire显示文摘 | Katz PP Yelin EH Smith S | 1997 | Am J Pespir Crit Care Med1997，155，2： | 1 |
| 15 | Systematic identification of abundant A-to-I editing sites in the human transcriptome显示文摘 | Levanon E Y Eisenberg E Yelin R | 2004 | Nat Biotechnol2004，22，8： | 1 |
| 16 | Perceived control of asthma and quality of life among adults with asthma 显示文摘 | Kata PP Yelin EH Eisner MD | 2002 | Ann Allergy Asthma Immunol2002，89，3： | 1 |
| 17 | The Development of Depressive Symptoms among Women with Rheumatoid Arthritis:the Role of Function 显示文摘 | Katz P P Yelin E H | 1995 | Arth Rheum1995，1，： | 1 |
| 18 | The influence of perceived control of asthma on health outcome显示文摘 | Calfee CS Katz PP Yelin EH | 2006 | Chest2006，130，5： | 1 |
| 19 | Perceived neighborhood problems and quality of life,physical functioning,and depressive symptoms among adults with asthma显示文摘 | Yen IH Yelin EH Katz P | 2006 | Am J Public Health2006，96，5： | 1 |
| 20 | Activation of a built-in bacterial programmed cell death system as a novel mechanism of ac- tion of some antibiotics显示文摘 | Engelberg-Kulka H Yelin I Kolodkin-Gal I | 2009 | Commun Integr Biol2009，2，3： | 1 |
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