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| 1 | A Novel Integrated Method for Large-Scale Detection, Identification, and Quantification of Widely Targeted Metabolites: Application in the Study of Rice Metabolomics显示文摘液体 chromatographymass spectrometry (最小公倍数) 基于 metabolomics 被 MS 2 的构造便于光谱从全部的扫描 ESI MS/MS 数据的标签(MS2T ) 图书馆,和广泛地指向的 metabolomics methodusing MS/MS 数据的发展从真标准聚在一起。在这份报告,称为逐步的多重离子 monitoring-enhancedproduct 离子(逐步的 MIMEPI ) 的新奇策略被开发构造 MS2T 图书馆,逐步的 MIM 在被用作调查 scansto 触发 EPI 的获得。698 的一个全部的数字(几乎) 有 MS 2 系列的非冗余的代谢物被获得,哪个 135 代谢物被识别 / 注解。集成数据从我们的 MS2T libraryand 收集了监视的另外的可得到的多重反应(MRM ) 信息,一个广泛地指向的 metabolomics 方法被开发 toquantify 277 代谢物,包括一些植物激素。在米饭叶的脱水回答和自然变化 ofthese 代谢物的评估不仅与代谢物 suchas 血清素衍生物建议了 abscisic 酸(骆驼毛的织物)的协调规定, polyamine 在干旱应力下面结合,而且为 indica 和装饰用的梨树米饭亚种的辨别作为潜在的标记揭示了一些 C-glycosylated 黄酮。新 MS2T 图书馆构造和广泛地指向的 metabolomics 策略能被用作工具 forrice 功能的 genomics.Key 词: | Wei Chen Liang Gong Zilong GUO Wensheng Wang Hongyan Zhang Xianqing Liu SibinYu Lizhong Xiong Jie Luo | 2013 | Molecular Plant2013，6，6： | 162 |
| 2 | Rice Gene Network Inferred from Expression Profiling of Plants Overexpressing OsWRKY13, a Positive Regulator of Disease Resistance显示文摘积累的信息显示植物疾病电阻发信号小径经常与调整发展过程或不能生活的压力回答的另外的小径交往。然而,串音的这些类型的分子的机制仍然保持糟糕在大多数情况中理解。这里,我们报导那 OsWRKY13,到细菌、真菌的病原体的米饭电阻的使活跃之物,看起来在导致病原体的水杨酸盐依赖者防卫小径和五条另外的生理的小径之中为串音作为一个会聚的点工作。OsWRKY13-overexpressing 线的表达式侧面的染色体宽的分析建议 OsWRKY13 直接或间接地调整潜在地根据基因本体论数据库的分类涉及不同生理的进程的超过 500 基因的表达式。由比较在已知的小径或在 OsWRKY13-overexpressing 和野类型的植物之间的病原体感染和显型的细胞的过程工作的基因的表示模式,我们的数据建议 OsWRKY13 也在病原体感染期间是另外的生理的过程的一个管理者。联系 OsWRKY13 的疾病抵抗小径 synergistically 与 glutathione/glutaredoxin 系统和 flavonoid 生合成小径经由 OsWRKY13 交往监视氧化还原作用动态平衡并且分别地,通常认为地在 OsWRKY13-overexpressing 线提高抗菌剂 flavonoid phytoalexins 的生合成。同时,联系 OsWRKY13 的疾病抵抗小径看起来经由 OsWRKY13 与调停 SNAC1 的不能生活的压力防卫小径, jasmonic 酸发信号小径,和 terpenoid 新陈代谢小径反对地交往压制盐和冷防卫回答以及通常认为地延迟米饭生长和开发。 | Deyun Qiu Jun Xiao Weibo Xie Hongbo Liu Xianghua Li Lizhong Xiong Shiping Wang | 2008 | Molecular Plant2008，1，3： | 38 |
| 3 | Crop Phenomics and High-Throughput Phenotyping:Past Decades,Current Challenges,and Future Perspectives显示文摘Since whole-genome sequencing of many crops has been achieved,crop functional genomics studies have stepped into the big-data and high-throughput era.However,acquisition of large-scale phenotypic data has become one of the major bottlenecks hindering crop breeding and functional genomics studies.Nevertheless,recent technological advances provide us potential solutions to relieve this bottleneck and to explore advanced methods for large-scale phenotyping data acquisition and processing in the coming years.In this article,we review the major progress on high-throughput phenotyping in controlled environments and field conditions as well as its use for post-harvest yield and quality assessment in the past decades.We then discuss the latest multi-omics research combining high-throughput phenotyping with genetic studies.Finally,we propose some conceptual challenges and provide our perspectives on how to bridge the phenotype-genotype gap.It is no doubt that accurate high-throughput phenotyping will accelerate plant genetic improvements and promote the next green revolution in crop breeding. | Wanneng Yang Hui Feng Xuehai Zhang Jian Zhang John H.Doonan William David Batchelor Lizhong Xiong Jianbing Yan | 2020 | Molecular Plant2020，13，2： | 38 |
| 4 | Mutant Resources for the Functional Analysis of the Rice Genome显示文摘瑞斯是世界范围的最重要的庄稼之一,作为主食食物并且作为为 genomic 研究的一个模型系统。为了系统地把功能分到所有,在米饭染色体预言了基因,很多米饭异种线包括 T-DNA 插入创造的那些,标注的 Ds/dSpm,标注的 Tos17,和化学药品 / 照耀的 mutagenesis,被组在全世界产生了。在这研究,我们为米饭染色体的功能的分析考察了变异的资源的当前的地位。246 566 flanking 顺序的一个总数与 T-DNA, Ds/dSpm,或 Tos17 插入从米饭异种图书馆标注被收集了并且分析。在 211 470 唯一的点击之中,插入的结果表演在遗传因子的区域报道定位了因为 68.16% ,和 60.49% 原子基因包含至少一插入。当前,在米饭的 57% non-transposable-element-related 基因有 insertional 标签。另外, chemical/irradiation-induced 米饭异种图书馆为变异的地点的鉴定贡献了很多到基因鉴定和新技术。在这评论,我们总结这些工具怎么被用来产生异种的一个大集合。另外,我们讨论经典变化策略的优点。为了为基因在米饭,指向的 DNA,和象 RiceFox 一样的新资源完成 mutagenesis 的浸透,功能的鉴定从米饭异种资源的未来产生的一个观点被考察。 | Nili Wang Tuan Long Wen Yao Lizhong Xiong Qifa Zhang Changyin Wu | 2013 | Molecular Plant2013，6，3： | 21 |
| 5 | Genome-Wide Association Studies of Image Traits Reveal Genetic Architecture of Drought Resistance in Rice显示文摘理解植物怎么对干旱作出回应能有益于繁殖的干旱抵抗(医生) 。用一台非破坏性的 phenotyping 设备,为 507 米饭就职的 51 个基于图象的特点(i 特点) 被提取。这些 i 特点能被用来监视干旱回答 ? 并且高评估医生可遗传性和这些特点的大变化在自然人口在干旱应力下面被观察。染色体宽的协会研究(GWAS )?i 特点和传统的医生特点识别了 470 协会 loci,某包含知道医生相关的基因。这 470 loci, 443 loci (94%) 用 i 特点被识别, 437 loci (93%) 与以前报导的医生相关的量的特点 loci,和 313 loci (66.6%)co 局部性被 GWAS reproducibly 在不同的年里识别。协会网络,基于 GWAS 建立了结果,揭示中心 i 特点和中心 loci。这表明把的可行性和必要性复杂医生特点进可继承、简单的 i 特点。作为原则的证明,我们说明了这条综合途径的力量以前识别 unreported 医生相关的基因。OsPP15 与中心 i 特点被联系,并且它在医生的角色被基因转变实验证实。而且, i 特点能被用于医生连接分析,并且 69 个 i 特点地点协会被 recombinant 的 GWAS 和连接分析识别生来的线人口。最后,我们证实了 i 特点的关联在这个领域里搀。我们的学习为医生为原因的基因的基因解剖和发现提供一条有希望的新奇途径。 | Zilong Guo Wanneng Yang Yu Chang Xiaosong Ma Haifu Tu Fang Xiong Ni Jiang Hui Feng Chenglong Huang Peng Yang Hu Zhao Guoxing Chen Hongyan Liu Lijun Luo Honghong Hu Qian Liu Lizhong Xiong | 2018 | Molecular Plant2018，11，6： | 21 |
| 6 | Determination of rice panicle numbers during heading by multi-angle imaging显示文摘Plant phenomics has the potential to accelerate progress in understanding gene functions and environmental responses. Progress has been made in automating high-throughput plant phenotyping. However, few studies have investigated automated rice panicle counting. This paper describes a novel method for automatically and nonintrusively determining rice panicle numbers during the full heading stage by analyzing color images of rice plants taken from multiple angles. Pot-grown rice plants were transferred via an industrial conveyer to an imaging chamber. Color images from different angles were automatically acquired as a turntable rotated the plant. The images were then analyzed and the panicle number of each plant was determined. The image analysis pipeline consisted of extracting the i2 plane from the original color image, segmenting the image, discriminating the panicles from the rest of the plant using an artificial neural network, and calculating the panicle number in the current image. The panicle number of the plant was taken as the maximum of the panicle numbers extracted from all 12 multi-angle images. A total of 105 rice plants during the full heading stage were examined to test the performance of the method. The mean absolute error of the manual and automatic count was 0.5, with 95.3% of the plants yielding absolute errors within ± 1. The method will be useful for evaluating rice panicles and will serve as an important supplementary method for high-throughput rice phenotyping. | Lingfeng Duan Chenglong Huang Guoxing Chen Lizhong Xiong Qian Liu Wanneng Yang | 2015 | The Crop Journal2015，3，3： | 18 |
| 7 | A structural view of the conserved domain of rice stress-responsive NAC1显示文摘The importance of NAC(named as NAM,ATAF1,2,and CUC2)proteins in plant development,transcription regulation and regulatory pathways involving proteinprotein interactions has been increasingly recognized.We report here the high resolution crystal structure of SNAC1(stress-responsive NAC)NAC domain at 2.5Å.Although the structure of the SNAC1 NAC domain shares a structural similarity with the reported structure of the ANAC NAC1 domain,some key features,especially relating to two loop regions which potentially take the responsibility for DNA-binding,distinguish the SNAC1 NAC domain from other reported NAC structures.Moreover,the dimerization of the SNAC1 NAC domain is demonstrated by both soluble and crystalline conditions,suggesting this dimeric state should be conserved in this type of NAC family.Additionally,we discuss the possible NAC-DNA binding model according to the structure and reported biological evidences. | Qingfeng Chen Quan Wang Lizhong Xiong Zhiyong Lou | 2011 | Protein & Cell2011，2，1： | 18 |
| 8 | Characterization of a Purine Permease Family Gene OsPUP7 Involved in Growth and Development Control in Rice显示文摘In this study,PUP-type cytokinin transporter genes were identifed in rice(Oryza sativa L.).The Oryza sativa purine permease(OsPUP)family has 12 members that show similar predicted protein sequences with AtPUPs.To reveal the functions of OsPUP genes,we searched the T-DNA mutant library of rice and found one mutant for the member OsPUP7.The T-DNA insertion caused a new transcript that encodes a protein with 26 amino acids different from the native OsPUP7 at the C-terminus.The mutant showed multiple phenotypic changes including increased plant height,big seeds,and delayed fowering.The mutant also showed increased sensitivity to drought and salt stresses and treatments with kinetin and abscisic acid.OsPUP7 is expressed mainly in the vascular bundle,pistil,and stamens.The measurement of cytokinins(CKs)showed that CK content in the mutant spikelets accumulated higher than that in the wild type.Moreover,uptake experiment in the yeast fcy2 mutant suggested that OsPUP7 has the ability to transport caffeine,a CK derivative.Our results indicate that the PUP transport system also exists in rice,and OsPUP7 has an important role in the transport of CK,thus affecting developmental process and stress responses. | Zhuyun Qi Lizhong Xiong | 2013 | Journal of Integrative Plant Biology2013，55，11： | 13 |
| 9 | GID1 modulates stomatal response and submergence tolerance involving abscisic acid and gibberellic acid signaling in rice显示文摘Plant responses to abiotic stresses are coordinated by arrays of growth and developmental programs.Gibberellic acid(CA) and abscisic acid(ABA) play critical roles in the developmental programs and environmental responses,respectively,through complex signaling and metabolism networks.However,crosstalk between the two phytohormones in stress responses remains largely unknown.In this study,we report that CIBBERELLIN-INSENSITIVE DWARF 1(GID1),a soluble receptor for GA,regulates stomatal development and patterning in rice(Oryza sativa L.).The gid1 mutant showed impaired biosynthesis of endogenous ABA under drought stress conditions,but it exhibited enhanced sensitivity to exogenous ABA.Scanning electron microscope and infrared thermal image analysis indicated an increase in the stomatal conductance in the gid1 mutant under drought conditions.Interestingly,the gid1 mutant had increased levels of chlorophyll and carbohydrates under submergence conditions,and showed enhanced reactive oxygen species(ROS)-scavenging ability and submergence tolerance compared with the wild-type.Further analyses suggested that the function of GID1 in submergence responses is partially dependent on ABA,and GA signaling by GID1 is involved in submergence tolerance by modulating carbohydrate consumption.Taken together,these findings suggest GID1 plays distinct roles in stomatal response and submergence tolerance through both the ABA and GA signaling pathways in rice. | Hao Du Yu Chang Fei Huang Lizhong Xiong | 2015 | Journal of Integrative Plant Biology2015，57，11： | 12 |
| 10 | Retrospective study on Professor Zhongying Zhou's experience in Traditional Chinese Medicine treatment on diabetic nephropathy显示文摘OBJECTIVE:To study and analyze the etiology and pathogenesis,diagnosis and prescription for cases of diabetic nephropathy(DN) treated by Professor Zhongying Zhou(Prof.Zhou) with the help of dada mining technique,so as to inherit his clinical experience and academic thoughts.METHODS:After pretreatment of the medical record information,statistical software SPSS 13.0 was used to analyze and process the standardized data using the descriptive analysis,cluster analysis and association rules.RESULTS:Ninety-four entries derived from Traditional Chinese Medicine(TCM) four-diagnostic information were selected.Through data mining,the highest frequency was yellow-thin-greasy tongue coating,followed by dark tongue,and then by thready-slippery pulse.The main self-conscious symptoms were limb numbness,dry mouth,frequent micturition,etc.With respect to pathogenesis,the etiology related to kidney reached 73.46%.The frequency of pathological factors for deficiency,blood stasis,heat,dampness,phlegm and dryness were 137.65%,80.25%,78.40%,48.77%,21.60%,and 14.20% respectively.A total of 236 kinds of herbs were used 2913 person times,averaging 17.98 herbs per prescription.CONCLUSION:The pathological location of DN is in the kidney.The pathogenesis of the disease is deficiency in origin and excess in superficiality,the former of which include deficiency of the liver and kidney,and deficiency of both Qi and Yin.The main pathological factors are blood stasis,heat,dampness,phlegm,and dryness;and they act upon each other to form the complex pathogenesis in terms of blood stasis-heat,dampness-heat,phlegm-heat,and dryness-heat.All the above factors are always crucial in the aggravation of DN throughout the whole course of its pathological evolution. | Kelei Su Fangshi Zhu Lizhong Guo Yao Zhu Wenlin Li Xingjiang Xiong | 2013 | Journal of Traditional Chinese Medicine2013，33，2： | 11 |
| 11 | Integrative Regulation of Drought Escape through ABA-Dependent and -Independent Pathways in Rice显示文摘许多植物发展了干旱逃跑(DE ) 机制弄短他们的生命周期当面对水赤字条件时。当干旱忍耐强烈地被调查了时, DE 的基因、分子的机制留下逃犯。在这研究,我们发现在米饭开发的早阶段的低水赤字处理(LWT ) 能触发早 flowering 并且减少 tiller 数字。LWT 导致了 abscisic 酸(骆驼毛的织物) 的累积,它接着由同时地调整许多花相关的基因支持早 flowering 在轻感觉和生理节奏的钟上有反馈效果。而且,,一些包括 OsTOC1 , Ghd7 ,和 PhyB 的轻受体,生理节奏的部件,和花相关的基因被发现以一种骆驼毛的织物依赖者方式涉及 LWT 一些包括 OsGI 的另外的花相关的基因, OsELF3 , OsPRR37 ,并且 OsMADS50 涉及独立于骆驼毛的织物的 DE 的规定。另外,我们发现 strigolactones 和 OsTB1 在 LWT 下面涉及 tillering 抑制,它独立于在米饭的 flowering 小径。一起拿,我们的调查结果提供在米饭的 DE 被多重小径并列地在繁殖(flowering ) 期间调整的引人注目的证据开关。 | Hao Du Fei Huang Nai Wu Xianghua Li Honghong Hu Lizhong Xiong | 2018 | Molecular Plant2018，11，4： | 9 |
| 12 | Reversible Histone H2B Monoubiquitination Fine-Tunes Abscisic Acid Signaling and Drought Response in Rice显示文摘Histone H2B monoubiquitination (H2Bub1) plays important roles in several physiological and developmental processes, but its roles in the regulation of plant stress responses remain elusive. Here, we report that H2Bub1 is crucially involved in abscisic acid (ABA) signaling and drought response in rice. We found that rice HISTONE MONOUBIQUITINATION2 (OsHUB2), an E3 ligase for H2Bub1, in teracted with OsbZIP46, a key transcription factor regulating ABA signaling and drought response in rice. Genetic analyses suggest that OsHUB2, upregulated by drought and ABA, positively modulates ABA sensitivity and drought resistance. The H2Bub1 levels were in creased in the target genes of OsbZIP46 under the drought stress and ABA treat- merits, which were positively correlated with their increased expression levels. Interestingly, MODD, a reported suppressor of ABA signaling and drought resistance by mediating OsbZIP46 deactivation and degradation, could reduce the H2Bub1 levels in the target genes of OsbZIP46 by recruiting a putative deubiquitinase OsOTLD1 . Suppression of OsOTLD1in vivo resulted in increased H2Bub1 levels and expression of OsbZIP46 target genes. Collectively, these fin dings established an elaborate mecha nism of histone monoubiquitination in the fine-turning of ABA signaling and drought response by balancing H2Bub1 deposition and removal. | Siqi Ma Ning Tang Xu Li Yongjun Xie Denghao Xiang Jie Fu Jianqiang Shen Jun Yang Haifu Tu Xianghua Li Honghong Hu Lizhong Xiong | 2019 | Molecular Plant2019，12，2： | 7 |
| 13 | A deep learning-integrated micro-CT image analysis pipeline for quantifying rice lodging resistance-related traits显示文摘Lodging is a common problemin rice,reducing its yield andmechanical harvesting efficiency.Rice architecture is a key aspect of its domestication and a major factor that limits its high productivity.The ideal rice culm structure,includingmajor_axis_culm,minor axis_culm,andwall thickness_culm,is critical for improving lodging resistance.However,the traditionalmethod ofmeasuring rice culms is destructive,time consuming,and labor intensive.In this study,we used a high-throughput micro-CT-RGB imaging system and deep learning(SegNet)todevelopa high-throughputmicro-CTimageanalysis pipelinethatcanextract 24 riceculmmorphological traits and lodging resistance-related traits.When manual and automatic measurements were compared at themature stage,the mean absolute percentage errors for major_axis_culm,minor_axis_culm,andwall_thickness_culmin 104 indica rice accessionswere 6.03%,5.60%,and 9.85%,respectively,and the R^(2) valueswere 0.799,0.818,and 0.623.We also builtmodels of bending stress using culmtraits at the mature and tillering stages,and the R^(2) values were 0.722 and 0.544,respectively.The modeling results indicated that this method can quantify lodging resistance nondestructively,even at an early growth stage.In addition,we also evaluated the relationships of bending stress toshoot dryweight,culm density,and drought-related traits and found that plants with greater resistance to bending stress had slightly higher biomass,culm density,and culm area but poorer drought resistance.In conclusion,we developed a deep learning-integrated micro-CT image analysis pipeline to accurately quantify the phenotypic traits of rice culms in4.6 min per plant;this pipeline will assist in future high-throughput screening of large rice populations for lodging resistance. | Di Wu Dan Wu Hui Feng Lingfeng Duan Guoxing Dai Xiao Liu Kang Wang Peng Yang Guoxing Chen Alan P.Gay John H.Doonan Zhiyou Niu Lizhong Xiong Wanneng Yang | 2021 | Plant Communications2021，2，2： | 7 |
| 14 | Synergistic regulation of drought-responsive genes by transcription factor OsbZIP23 and histone modification in rice显示文摘Thousands of differentially expressed genes(DEGs)have been identified in rice under drought stress conditions.However,the regulatory mechanism of these DEGs remains largely unclear.Here,we report an interplay between histone H3K4me3 modification and transcription factor Osb ZIP23 in the regulation of a dehydrin gene cluster under drought stress conditions in rice.When the H3K4me3 modification level was increased,the dehydrin gene expression levels were increased,and the binding levels of Osb ZIP23 to the promoter of the dehydrin genes were also enhanced.Conversely,the H3K4me3 modification and dehydrin gene expression levels were downregulated in the osbzip23 mutant under drought stress conditions.Our study uncovers a collaboration between transcription factor and H3K4me3 modification in the regulation of droughtresponsive genes,which will help us to further understand the gene regulation mechanism under stress conditions in plants. | Wei Zong Jun Yang Jie Fu Lizhong Xiong | 2020 | Journal of Integrative Plant Biology2020，62，6： | 6 |
| 15 | Nondestructive 3D Image Analysis Pipeline to Extract Rice Grain Traits Using X-Ray Computed Tomography显示文摘The traits of rice panicles play important roles in yield assessment,variety classification,rice breeding,and cultivation management.Most traditional grain phenotyping methods require threshing and thus are time-consuming and labor-intensive;moreover,these methods cannot obtain 3D grain traits.In this work,based on X-ray computed tomography,we proposed an image analysis method to extract twenty-two 3D grain traits.After 104 samples were tested,the R^(2) values between the extracted and manual measurements of the grain number and grain length were 0.980 and 0.960,respectively.We also found a high correlation between the total grain volume and weight.In addition,the extracted 3D grain traits were used to classify the rice varieties,and the support vector machine classifier had a higher recognition accuracy than the stepwise discriminant analysis and random forest classifiers.In conclusion,we developed a 3D image analysis pipeline to extract rice grain traits using X-ray computed tomography that can provide more 3D grain information and could benefit future research on rice functional genomics and rice breeding. | Weijuan Hu Can Zhang Yuqiang Jiang Chenglong Huang Qian Liu Lizhong Xiong Wanneng Yang Fan Chen | 2020 | Plant Phenomics2020，2，1： | 6 |
| 16 | Improving the resistance of the rice PTGMS line Feng39S by pyramiding blast,bacterial blight,and brown planthopper resistance genes显示文摘Knowledge of rice(Oryza sativa L.)genes and various DNA markers can be used in genomic breeding programs aimed at developing improved elite rice cultivars.We used an efficient genomic breeding approach to pyramid four resistance genes(Pi2,Xa23,Bph14,and Bph15)in the popular photoperiod-and thermosensitive genic male sterile(PTGMS)rice line Feng39S.We performed foreground selection for the target genes,followed by recombinant selection and background selection.This process reduced the sizes of the genomic segments harboring the target genes(566.8 kb for Pi2,1143.9 kb for Xa23,774.7 kb for Bph14,and 1574.9 kb for Bph15)and accelerated the recovery of the recurrent parent genome to proportions ranging from 98.77%to 99.16%,thus resulting in four near-isogenic lines.To assemble the four resistance genes in Feng39S,we performed a double-way cross combined with foreground and background selection to generate two improved lines of Feng39S(Pi2+Xa23+Bph14+Bph15)with a recurrent parent genome recovery of 98.98%.The two lines showed agronomic performance,grain quality,and fertility–sterility transition characteristics similar to those of the original Feng39S line.The newly developed PTGMS lines and corresponding hybrid combinations were resistant to various field blast isolates and seven representative isolates of bacterial blight.At the seedling stage,the lines also showed resistance against brown planthopper.This study provides an efficient and accurate genomic breeding approach for introducing desirable traits into PTGMS lines. | Dabing Yang Lizhong Xiong Tongmin Mou Jiaming Mi | 2022 | The Crop Journal2022，10，4： | 3 |
| 17 | An inferred functional impact map of genetic variants in rice显示文摘Interpreting the functional impacts of genetic variants(GVs)is an important challenge for functional genomic studies in crops and next-generation breeding.Previous studies in rice(Oryza sativa)have focused mainly on the identification of GVs,whereas systematic functional annotation of GVs has not yet been performed.Here,we present a functional impact map of GVs in rice.We curated haplotype information for 17397026 GVs from sequencing data of 4726 rice accessions.We quantitatively evaluated the effects of missense mutations in coding regions in each haplotype based on the conservation of amino acid residues and obtained the effects of 918848 non-redundant missense GVs.Furthermore,we generated high-quality chromatin accessibility(CA)data from six representative rice tissues and used these data to train deep convolutional neural network models to predict the impacts of 5067405 GVs for CA in regulatory regions.We characterized the functional properties and tissue specificity of the GV effects and found that large-effect GVs in coding and regulatory regions may be subject to selection in different directions.Finally,we demonstrated how the functional impact map could be used to prioritize causal variants in mapping populations.This impact map will be a useful resource for accelerating gene cloning and functional studies in rice,and can be freely queried in RiceVarMap V2.0(http://ricevarmap.ncpgr.cn). | Hu Zhao Jiacheng Li Ling Yang Gang Qin Chunjiao Xia Xingbing Xu Yangmeng Su Yinmeng Liu Luchang Ming Ling-Ung Chen Lizhong Xiong Weibo Xie | 2021 | Molecular Plant2021，14，9： | 3 |
| 18 | Over-expression of a LEA gene in rice improves drought resistance under the field conditions显示文摘 | Benze Xiao Yuemin Huang Ning Tang Lizhong Xiong | 2007 | Theoretical and Applied Genetics2007，，1： | 2 |
| 19 | Characterization of a stress responsive proteinase inhibitor gene with positive effect in improving drought resistance in rice显示文摘 | Yuemin Huang Benze Xiao Lizhong Xiong(Huang Y Xiao B Xiong L) | 2007 | Planta2007，226，： | 1 |
| 20 | Systematic analysis of NPK1 -like genes in rice reveals a stress-inducible gene cluster co-localized with a quantitative trait locus of drought resistance显示文摘 | Jing Ning Siyuan Liu Honghong Hu Lizhong Xiong | 2008 | Molecular Genetics and Genomics2008，，6： | 1 |
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