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| 1 | Genome wide abnormal DNA methylome of human blastocyst in assisted reproductive technology显示文摘Proper reprogramming of parental DNA methylomes is essential for mammalian embryonic development.However,it is unknown whether abnormal methylome reprogramming occurs and is associated with the failure of embryonic development.Here we analyzed the DNA methylomes of 57 blastocysts and 29 trophectoderm samples with different morphological grades during assisted reproductive technology(ART) practices.Our data reveal that the global methylation levels of high-quality blastocysts are similar(0.30 ± 0.02,mean ± SD).while the methylation levels of low-quality blastocysts are divergent and away from those of high-quality blastocysts.The proportion of blastocysts with a methylation level falling within the range of 0.30 ± 0.02 in different grades correlates with the live birth rate for that grade.Moreover,abnormal methylated regions are associated with the failure of embryonic development.Furthermore,we can use the methylation data of cells biopsied from trophectoderm to predict the blastocyst methylation level as well as to detect the aneuploidy of the blastocysts.Our data indicate that global abnormal methylome reprogramming often occurs in human embryos,and suggest that DNA methylome is a potential biomarker in blastocyst selection in ART. | Guoqiang Li Yang Yu Yong Fan Congru Li Xiaocui Xu Jialei Duan Rong Li Xiangjin Kang Xin Ma Xuepeng Chen Yuwen Ke Jie Yan Ying Lian Ping Liu Yue Zhao Hongcui Zhao Yaoyong Chen Xiaofang Sun Jianqiao Liu Jie Qiao Jiang Liu | 2017 | Journal of Genetics and Genomics2017，44，10： | 5 |
| 2 | Clinical and radiological features of medullary infarction caused by spontaneous vertebral artery dissection显示文摘Background and purpose Medullary infarction(MI)caused by spontaneous vertebral artery dissection(sVAD)is an important type of stroke.It is important to distinguish sVAD from other causes of stroke since the treatment strategies and prognosis were different between them.In this study,we aimed to explore the clinical and radiological features of MI in patients with acute MI caused by sVAD.Methods Patients with acute MI caused by sVAD and non-sVAD in a single tertiary hospital were enrolled from 2010 to 2020.Epidemiologic,clinical and image features were collected and analysed.MI lesions were categorised into three levels rostrocaudally and four arterial groups:anteromedial,anterolateral,lateral and posterior.Results A total of 128 patients with MI were enrolled with 47 cases of sVAD and 81 cases of non-sVAD.Patients with sVAD were younger than those with non-sVAD(med 44 years old vs 58 years old).The sVAD group was less likely to have hypertension(44.68%vs 67.90%;p=0.010)and diabetes(19.15%vs 45.69%;p=0.003),but more likely to have non-sudden onset(27.66%vs 9.87%,p=0.009),minor neck injury(19.15%vs 1.23%;p=0.001)and headache(46.81%vs 7.41%;p=0.000).Vertically,sVAD became more common in caudal medulla than in rostral medulla.Horizontally,the sVAD group was more likely to have lateral MI(91.48%vs 2.96%,p=0.000).In multivariable logistic regression analysis,age,non-sudden onset and headache were independently associated with sVAD with ORs of 0.935(95%CI 0.892 to 0.981,p=0.006),3.507(95%CI 1.060 to 11.599,p=0.040)and 5.426(95%CI 1.673 to 17.599,p=0.005).Conclusion sVAD was not uncommon in patients with MI,especially in patients with lateral MI.Young patients with headache and non-sudden onset should remind clinician the possibility of sVAD. | Chun Yu Zhu Zhu Siying Li Yi Xu Wei Yan Xiaocui Kang Yao Li Qiang Dong Weijun Tang Xiang Han | 2022 | Stroke & Vascular Neurology2022，7，3： | 3 |
| 3 | Evolutionary transition between invertebrates and vertebrates via methylation reprogramming in embryogenesis显示文摘Major evolutionary transitions are enigmas,and the most notable enigma is between invertebrates and vertebrates,with numerous spectacular innovations.To search for the molecular connections involved,we asked whether global epigenetic changes may offer a clue by surveying the inheritance and reprogramming of parental DNA methylation across metazoans.We focused on gametes and early embryos,where the methylomes are known to evolve divergently between fish and mammals.Here,we find that methylome reprogramming during embryogenesis occurs neither in pre-bilaterians such as cnidarians nor in protostomes such as insects,but clearly presents in deuterostomes such as echinoderms and invertebrate chordates,and then becomes more evident in vertebrates.Functional association analysis suggests that DNA methylation reprogramming is associated with development,reproduction and adaptive immunity for vertebrates,but not for invertebrates.Interestingly,the single HOX cluster of invertebrates maintains unmethylated status in all stages examined.In contrast,the multiple HOX clusters show dramatic dynamics of DNA methylation during vertebrate embryogenesis.Notably,the methylation dynamics of HOX clusters are associated with their spatiotemporal expression in mammals.Our study reveals that DNA methylation reprogramming has evolved dramatically during animal evolution,especially after the evolutionary transitions from invertebrates to vertebrates,and then to mammals. | Xiaocui Xu Guoqiang Li Congru Li Jing Zhang Qiang Wang David KSimmons Xuepeng Chen Naveen Wijesena Wei Zhu Zhanyang Wang Zhenhua Wang Bao Ju Weimin Ci Xuemei Lu Daqi Yu Qian-fei Wang Neelakanteswar Aluru Paola Oliveri Yong EZhang Mark QMartindale Jiang Liu | 2019 | National Science Review2019，6，5： | 2 |
| 4 | MIXED FINITE ELEMENT METHODS FOR FRACTIONAL.NAVIER-STOKES EQUATIONS显示文摘This paper gives the detailed numerical analysis of mixed finite element method for fractional Navier-Stokes equations.The proposed method is based on the mixed finite element method in space and a finite difference scheme in time.The stability analyses of semi-discretization scheme and fully discrete scheme are discussed in detail.Furthermore,We give the convergence analysis for both semidiscrete and flly discrete schemes and then prove that the numerical solution converges the exact one with order O(h2+k),where h and k:respectively denote the space step size and the time step size.Finally,numerical examples are presented to demonstrate the effectiveness of our numerical methods. | Xiaocui Li Xu You | 2021 | Journal of Computational Mathematics2021，39，1： | 1 |
| 5 | Tungstocobaltate-pillared layered double hydroxides:Preparation,characterization,magnetic and catalytic properties显示文摘 | XIAOCUI WEI YOUZHI FU LIN XU | 2008 | Journal of Solid State Chemistry2008，181，： | 1 |
| 6 | Eco-security Monitoring Index System for Urban Development Zone显示文摘 | Xiaocui Zhou Zhifeng Yang Linyu Xu | 2010 | Procedia Environmental Sciences2010，，： | 1 |
| 7 | Preparation of biomimetic gene hydrogel via polymerase chain reaction for cell-free protein expression显示文摘Deoxyribonucleic acid(DNA)hydrogels,a three-dimensional(3 D)network made from DNA chains,have attracted great attention because of its molecular programmability,excellent biocompatibility and wide biomedical applications.Construction of hydrogel incorporating genetic function is still a challenge because of the limitations in available preparation methods.Herein,we develop a polymerase chain reaction(PCR)based strategy to construct gene integrated hydrogel to mimic the biofunction of nucleus zone.DNA primers were chemically modified by methacrylamide,which were used as modular primers in PCR to hybridize with template plasmid DNA,yielding methacrylamide functionalized gene(Acry-gene).Afterwards,Acry-gene was chemically cross-linked and compressed via free radical polymerization of terminal group methacrylamide to form a threedimensional gene network,namely gene hydrogel.The gene hydrogel retained the genetic function and expressed protein successfully in a cell free protein expression system.This work provides a general approach for the construction of biofunctional gene hydrogel which mimics bioprocesses,showing great potential in biomedicine and biomimetic fields. | Feng Li Wenting Yu Xue Zhang Xiaocui Guo Xihan Xu Xiaolei Sun Dayong Yang | 2020 | Science China Chemistry2020，63，1： | 1 |
| 8 | Bilineage embryo-like structure from EPS cells can produce live mice with tetraploid trophectoderm显示文摘Self-organized blastoids from extended pluripotent stem(EPs)cells possess enormous potential for investigating postimplantation embryo development and related diseases.However,the limited ability of postimplantation development of Eps-blastoids hinders its further application.In this study,single-cell transcriptomic analysis indicated that the“trophectoderm(TE)-like structure”of EPSblastoids was primarily composed of primitive endoderm(PrE)-related cells instead of TE-related cells.We further identified PrE-like cells in EPS cell culture that contribute to the blastoid formation with TE-like structure.Inhibition of PrE cell differentiation by inhibiting MEK signaling or knockout of Gata6 in EPS cells markedly suppressed EPS-blastoid formation.Furthermore,we demonstrated that blastocyst-like structures reconstituted by combining the EPs-derived bilineage embryo-like structure(BLEs)with either tetraploid embryos or tetraploid TE cells could implant normally and develop into live fetuses.In summary,our study reveals that TE improvement is critical for constructing a functional embryo using stem cells in vitro. | Kuisheng Liu Xiaocui Xu Dandan Bai Yanhe Li Yalin Zhang Yanping Jia Mingyue Guo Xiaoxiao Han Yingdong Liu Yifan Sheng Xiaochen Kou Yanhong Zhao jiqing Yin Sheng Liu jiayu Chen Hong Wang Yixuan Wang Wenqiang Liu Shaorong Gao | 2023 | Protein & Cell2023，14，4： | 0 |
| 9 | Effect of SARS-CoV-2 infection in early pregnancy on placental development显示文摘Dear Editor,Since the COVID-19 pandemic, the potential risks associated with maternal SARS-CoV-2 infection and its effect on fetal development have been a subject of considerable public concern. Previous studies have shown that SARS-CoV-2 infection during pregnancy may increase the incidence of adverse outcomes. | Shanru Yi Liping Wang Mengting Wang Wei Hong Ben Xu Xiaoying He Mengtian Yang Zhiping Wu Beiying Wang Guang Yang Shijun Shen Xinyu Cui Ruixue Wang Kai Wang Hong Wang Xiaocui Li Shaorong Gao Cizhong Jiang Jiayu Chen | 2024 | Science China(Life Sciences)2024，67，3： | 0 |
| 10 | Mapping QTL affecting the vertical distribution and seed set of soybean [Glycine max(L.) Merr.] pods显示文摘Number of pods per plant and number of seeds per pod are quantitative,multigenic traits and important components of yield in soybean[Glycine max(L.)Merr.].Pods are distributed unevenly in the upper,middle,and lower segments of the plant and this distribution is affected by sowing date(SD).A population of four-way recombinant inbred lines(FW-RIL),containing 160 F2:8 individuals,was generated from the cross(Kenfeng 14×Kenfeng 15)×(Heinong 48×Kenfeng 19).A linkage map consisting of 275 simple sequence repeat(SSR)markers was used to map quantitative trait loci(QTL)associated with the production of one,two,three,and four seeds per pod in the upper,middle,and lower segments of plants at two SDs,totaling 12 measurements per SD.A wide range of variation in the twelve characteristics was observed among the four parental lines and the FW-RIL population at the two SDs.The effect of SD2(May 17,2016)on pod number was stronger than that of SD1(May 7,2016)because the heritability of each trait in the SD1 experiment was generally greater than that of SD2.The study identified 76 QTL controlling pod number,with the phenotypic variation explained by each QTL ranging from 1.86%to 13.71%.The numbers of QTL controlling one,two,three,and four seeds per pod were 28,23,23,and 23,respectively.There were 30,28,and 28 QTL controlling the pod number in the upper,middle,and lower segments of the plant,respectively.Forty-five QTL were identified at SD1 and 38 QTL were identified at SD2.Seventeen QTL were associated with pod-number traits.The QTL qPNA1–3 was associated with the number of pods containing one seed in the middle segment of the plant at both SDs.Sixty-three QTL were published QTL(common areas existed when integrating on a map GmComposite2003 of Wm82 based on left and right markers).and 13 QTL related to pod number were newly discovered.These results provide a reference for breeders to improve soybean yield by combining advantageous alleles for these QTL.Future studies may reveal candidate genes for these QTL and identify causal alleles for markerassisted selection. | Shiping Liu Hong Xue Kaixin Zhang Ping Wang Daiqun Su Wenbin Li Shichao Xu Jianan Zhang Zhongying Qi Yanlong Fang Xiyu Li Yue Wang Xiaocui Tian Jie Song Jiajing Wang Chang Yang Sitong Jiang Wen-Xia Li Hailong Ning | 2019 | The Crop Journal2019，7，5： | 0 |
| 11 | β-Catenin Deletion in Regional Neural Progenitors Leads to Congenital Hydrocephalus in Mice显示文摘Congenital hydrocephalus is a major neurological disorder with high rates of morbidity and mortality;however,the underlying cellular and molecular mechanisms remain largely unknown.Reproducible animal models mirroring both embryonic and postnatal hydrocephalus are also limited.Here,we describe a new mouse model of congenital hydrocephalus through knockout ofβ-catenin in Nkx2.1-expressing regional neural progenitors.Progressive ventriculomegaly and an enlarged brain were consistently observed in knockout mice from embryonic day 12.5 through to adulthood.Transcriptome profiling revealed severe dysfunctions in progenitor maintenance in the ventricular zone and therefore in cilium biogenesis afterβ-catenin knockout.Histological analyses also revealed an aberrant neuronal layout in both the ventral and dorsal telencephalon in hydrocephalic mice at both embryonic and postnatal stages.Thus,knockout ofβ-catenin in regional neural progenitors leads to congenital hydrocephalus and provides a reproducible animal model for studying pathological changes and developing therapeutic interventions for this devastating disease. | Lin Ma Yanhua Du Xiangjie Xu Hexi Feng Yi Hui Nan Li Guanyu Jiang Xiaoqing Zhang Xiaocui Li Ling Liu | 2022 | Neuroscience Bulletin2022，38，1： | 0 |
| 12 | 哺乳动物成熟配子的染色体三维结构及其在早期胚胎发育中的重编程规律显示文摘文章简介染色体高级结构在调控基因表达中发挥非常重要的作用。此前对于哺乳动物胚胎发育过程中染色体三维结构动态变化了解有限。课题组使用优化后的少量细胞Hi-C方法建立小鼠配子和早期胚胎的染色体三维结构图谱。 | Yuwen Ke Yanan Xu Xuepeng Chen Songjie Feng Zhenbo Liu Yaoyu Sun Xuelong Yao Fangzhen Li Wei Zhu Lei Gao Haojie Chen Zhenhai Du Wei Xie Xiaocui Xu 黄行许 刘江 | 2018 | 科学新闻2018，0，4： | 0 |
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