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| 1 | Chromosomal level assembly and population sequencing of the Chinese tree shrew genome显示文摘Chinese tree shrews (Tupaia belangeri chinensis) have become an increasingly important experimental animal in biomedical research due to their close relationship to primates. An accurately sequenced and assembled genome is essential for understanding the genetic features and biology of this animal. In this study, we used long-read single-molecule sequencing and high-throughput chromosome conformation capture (Hi-C) technology to obtain a high-qualitychromosome-scale scaffolding of the Chinese tree shrew genome. The new reference genome (KIZ version 2: TS_2.0) resolved problems in presently available tree shrew genomes and enabled accurate identification of large and complex repeat regions, gene structures, and species-specific genomic structural variants. In addition, by sequencing the genomes of six Chinese tree shrew individuals, we produced a comprehensive map of 12.8 M single nucleotide polymorphisms and confirmed that the major histocompatibility complex (MHC) loci and immunoglobulin gene family exhibited high nucleotide diversity in the tree shrew genome. We updated the tree shrew genome database (TreeshrewDB v2.0: http://www.treeshrewdb.org) to include the genome annotation information and genetic variations. The new high-quality reference genome of the Chinese tree shrew and the updated TreeshrewDB will facilitate the use of this animal in many different fields of research. | Yu Fan Mao-Sen Ye Jin-Yan Zhang Ling Xu Dan-Dan Yu Tian-Le Gu Yu-Lin Yao Jia-Qi Chen Long-Bao Lv Ping Zheng Dong-Dong Wu Guo-Jie Zhang Yong-Gang Yao | 2019 | Zoological Research2019，40，6： | 15 |
| 2 | Four Theses in Study of China's Urbanization显示文摘It may be an unpardonable sin to start a paper with an apology. But in this assembly of distinguished China scholars, I feel like a novice. My own field of | John Friedmann | 2006 | China City Planning Review2006，15，2： | 14 |
| 3 | Supra-(carbon nanodots) with a strong visible to near-infrared absorption band and efficient photothermal conversion显示文摘A novel concept and approach to engineering carbon nanodots(CNDs)were explored to overcome the limited light absorption of CNDs in low-energy spectral regions.In this work,we constructed a novel type of supra-CND by the assembly of surface charge-confined CNDs through possible electrostatic interactions and hydrogen bonding.The resulting supra-CNDs are the first to feature a strong,well-defined absorption band in the visible to near-infrared(NIR)range and to exhibit effective NIR photothermal conversion performance with high photothermal conversion efficiency in excess of 50%. | Di Li Dong Han Song-Nan Qu Lei Liu Peng-Tao Jing Ding Zhou Wen-Yu Ji Xiao-Yun Wang Tong-Fei Zhang De-Zhen Shen | 2016 | Light(Science & Applications)2016，5，1： | 12 |
| 4 | A high-quality chromosome-level genome assembly reveals genetics for important traits in eggplant显示文摘Eggplant(Solanum melongena L.)is an economically important vegetable crop in the Solanaceae family,with extensive diversity among landraces and close relatives.Here,we report a high-quality reference genome for the eggplant inbred line HQ-1315(S.melongena-HQ)using a combination of Illumina,Nanopore and 10X genomics sequencing technologies and Hi-C technology for genome assembly.The assembled genome has a total size of~1.17 Gb and 12 chromosomes,with a contig N50 of 5.26 Mb,consisting of 36,582 protein-coding genes.Repetitive sequences comprise 70.09%(811.14 Mb)of the eggplant genome,most of which are long terminal repeat(LTR)retrotransposons(65.80%),followed by long interspersed nuclear elements(LINEs,1.54%)and DNA transposons(0.85%).The S.melongena-HQ eggplant genome carries a total of 563 accession-specific gene families containing 1009 genes.In total,73 expanded gene families(892 genes)and 34 contraction gene families(114 genes)were functionally annotated.Comparative analysis of different eggplant genomes identified three types of variations,including singlenucleotide polymorphisms(SNPs),insertions/deletions(indels)and structural variants(SVs).Asymmetric SV accumulation was found in potential regulatory regions of protein-coding genes among the different eggplant genomes.Furthermore,we performed QTL-seq for eggplant fruit length using the S.melongena-HQ reference genome and detected a QTL interval of 71.29–78.26 Mb on chromosome E03.The gene Smechr0301963,which belongs to the SUN gene family,is predicted to be a key candidate gene for eggplant fruit length regulation.Moreover,we anchored a total of 210 linkage markers associated with 71 traits to the eggplant chromosomes and finally obtained 26 QTL hotspots.The eggplant HQ-1315 genome assembly can be accessed at http://eggplant-hq.cn.In conclusion,the eggplant genome presented herein provides a global view of genomic divergence at the whole-genome level and powerful tools for the identification of candidate genes for important traits in eggplant. | Qingzhen Wei Jinglei Wang Wuhong Wang Tianhua Hu Haijiao Hu Chonglai Bao | 2020 | Horticulture Research2020，7，1： | 12 |
| 5 | Multi-component assembly of luminescent rare earth hybrid materials显示文摘This review focuses on the recent research progress in the multi-component assembly of luminescent rare earth hybrid materials, which is based on the luminescent rare earth compounds and two or more other building units, including the other photoactive species. It covers the multi-component luminescent rare earth hybrids which was assembled with different(a) organic-inorganic polymeric units,(b)nanoporous units,(c) nanoparticle composites or(d) other developing special units. Finally, future challenges and opportunities in this field are discussed. Herein it mainly focuses on the work of Yan's group in recent years. | Qiuping Li Bing Yan | 2019 | Journal of Rare Earths2019，37，2： | 10 |
| 6 | Error modeling, sensitivity analysis and assembly process of a class of 3-DOF parallel kinematic machines with parallelogram struts显示文摘This paper presents an error modeling methodology that enables the tolerance design, assembly and kinematic calibration of a class of 3-DOF parallel kinematic machines with parallelogram struts to be integrated into a unified framework. The error mapping function is formulated to identify the source errors affecting the uncompensable pose error. The sensitivity analysis in the sense of statistics is also carried out to investigate the influences of source errors on the pose accuracy. An assembly process that can effectively minimize the uncompensable pose error is proposed as one of the results of this investigation. | 黄田 李亚 唐国宝 李思维 赵兴玉 David.J.Whitehouse Derek G.Chetewyn Xianping Liu | 2002 | Science China(Technological Sciences)2002，45，5： | 10 |
| 7 | Dielectrophoretic assembly of carbon nanotubes and stability analysis显示文摘Nanoscale dimensions and remarkable properties of carbon nanotubes make them promising building blocks for nanoelectronics.One requirement is the need to manipulate single or multiple carbon nanotubes to bridge electronic conductors.In this paper,multi-walled carbon nanotubes with a variety of sizes are assembled onto electrodes using alternative current electric felds by dielectrophoresis.The effect of the dielectrophoretic parameters and the nanotube size as well as the length uniformity on the assembly is experimentally investigated.Current–voltage characteristics of assembled carbon nanotubes are measured.The experimental results showed that both the dielectrophoretic parameters and length uniformity of carbon nanotubes have an infuence on the stability of assembly results.Choosing uniform carbon nanotubes with an appropriate length and suffcient stiffness,which are more controllable by dielectrophoresis,is necessary for an assembly of a small number of carbon nanotubes. | Libao An Craig Friedrich | 2013 | Progress in Natural Science:Materials International2013，23，4： | 9 |
| 8 | Population Genomic Analysis and De Novo Assembly Reveal the Origin of Weedy Rice as an Evolutionary Game显示文摘Crop weediness,especially that of weedy rice(Oryza sativa f.spontanea),remains mysterious.Weedy rice possesses robust ecological adaptability;however,how this strain originated and gradually formed proprietary genetic features remains unclear?Here,we demonstrate that weedy rice at Asian high latitudes(WRAH)is phylogenetically well defined and possesses unselected genomic characteristics in many divergence regions between weedy and cultivated rice.We also identified novel quantitative trait loci underlying weedy-specific traits,and revealed that a genome block on the end of chromosome 1 is associated with rice weediness.To identify the genomic modifications underlying weedy rice evolution,we generated the first de novo assembly of a high-quality weedy rice genome(WR04-6),and conducted a comparative genomics study between WR04-6 with other rice reference genomes.Multiple lines of evidence,including the results of demographic scenario comparisons,suggest that differentiation between weedy rice and cultivated rice was initiated by genetic improvement of cultivated rice and that the essence of weediness arose through semi-domestication.A plant height model further implied that the origin of WRAH can be modeled as an evolutionary game and indicated that strategy-based selection driven by fitness shaped its genomic diversity. | Jian Sun Dianrong Ma Liang Tang Minghui Zhao Guangchen Zhangh Wenjia Wang Jiayu Song Xiang Li Zimeng Liu Wenxing Zhang Quan Xu Yuncheng Zhou Jianzhong Wu Toshio Yamamoto Fei Dai Yan Lei Song Li Gang Zhou Hongkun Zheng Zhengjin Xu Wenfu Chen | 2019 | Molecular Plant2019，12，5： | 9 |
| 9 | The chromosome-scale assembly of the willow genome provides insight into Salicaceae genome evolution显示文摘Salix suchowensis is an early-flowering shrub willow that provides a desirable system for studies on the basic biology of woody plants.The current reference genome of S.suchowensis was assembled with 454 sequencing reads.Here,we report a chromosome-scale assembly of S.suchowensis generated by combining PacBio sequencing with Hi-C technologies.The obtained genome assemblies covered a total length of 356 Mb.The contig N50 of these assemblies was 263,908 bp,which was~65-fold higher than that reported previously.The contiguity and completeness of the genome were significantly improved.By applying Hi-C data,339.67 Mb(95.29%)of the assembled sequences were allocated to the 19 chromosomes of haploid willow.With the chromosome-scale assembly,we revealed a series of major chromosomal fissions and fusions that explain the genome divergence between the sister genera of Salix and Populus.The more complete and accurate willow reference genome obtained in this study provides a fundamental resource for studying many genetic and genomic characteristics of woody plants. | Suyun Wei Yonghua Yang Tongming Yin | 2020 | Horticulture Research2020，7，1： | 9 |
| 10 | Nanostructured ultrathin catalyst layer with ordered platinum nanotube arrays for polymer electrolyte membrane fuel cells显示文摘Fabrication of novel electrode architectures with nanostructured ultrathin catalyst layers is an effective strategy to improve catalyst utilization and enhance mass transport for polymer electrolyte membrane fuel cells (PEMFCs).Herein,we report the design and construction of a nanostructured ultrathin catalyst layer with ordered Pt nanotube arrays,which were obtained by a hard-template strategy based on ZnO,via hydrothermal synthesis and magnetron sputtering for PEMFC application.Because of the crystallographically preferential growth of Pt (111) facets,which was attributed to the structural effects of ZnO nanoarrays on the Pt nanotubes,the catalyst layers exhibit obviously higher electrochemical activity with remarkable enhancement of specific activity and mass transport compared with the state-of-the-art randomly distributed Pt/C catalyst layer.The PEMFC fabricated with the as-prepared catalyst layer composed of optimized Pt nanotubes with an average diameter of 90(±10) nm shows excellent performance with a peak power density of 6.0W/mgPt at 1 A/cm^2,which is 11.6%greater than that of the conventional Pt/C electrode. | Ruoyi Deng Zhangxun Xia Ruili Sun Suli Wang Gongquan Sun | 2020 | Journal of Energy Chemistry2020，29，4： | 8 |
| 11 | Viral manipulation of cellular protein conjugation pathways: The SUMO lesson显示文摘Small ubiquitin-like modifier(SUMO)ylation is a key posttranslational modification mechanism that controls the function of a plethora of proteins and biological processes. Given its central regulatory role, it is not surprising that it is widely exploited by viruses. A number of viral proteins are known to modify and/or be modified by the SUMOylation system to exert their function, to create a cellular environment more favorable for virus survival and propagation, and to prevent host antiviral responses. Since the SUMO pathway is a multi-step cascade, viral proteins engage with it at many levels, to advance and favor each stage of a typical infection cycle: replication, viral assembly and immune evasion. Here we review the current knowledge on the interplay between the host SUMO system and viral lifecycle. | Domenico Mattoscio Chiara V Segré Susanna Chiocca | 2013 | World Journal of Virology2013，2，2： | 8 |
| 12 | Allele-defined genome reveals biallelic differentiation during cassava evolution显示文摘Dear Editor,Generation of heterozygous genomes by hybridization between or within species can help maintain plant diversity and serve as a potential source of new species(Baek et al.,2018).Moreover,genomic heterozygosity is associated with genomic coadaptation,developmental stability,and heterosis.Accurate definition of alleles in haplotypes is necessary to precisely characterize allelic variation controlling agriculturally important traits(Shi et al.,2019).Currently,most released genomes have mosaic assembly of haplotypes due to random selection or collapse of alleles during genome assembly(Shi et al.,2019),which masked allelic variation and functional differentiation of divergent alleles in heterozygous species. | Wei Hu Changmian Ji Haitao shi Zhe Liang Zehong Ding Jianqiu Ye Wenjun Ou Gang Zhou Weiwei Tie Yan Yan Jinghao Yang Xiaoying Yang Yunxie Wei Zhiqiang Jin Jianghui Xie Ming Peng Wenquan Wang Anping Guo Biyu Xu Jianchun Guo Songbi Chen Liming Ma Mingcheng Wang Yang Zhou Xiaolong Li Ruoxi Li Siyi Guo Xinhui Xiao Zhongqing Wan Feifei An Jie Zhang Qingyun Leng Yin Li Ray Ming Kaimian Li | 2021 | Molecular Plant2021，14，6： | 8 |
| 13 | Electro-mechanically controlled assembly of reconfigurable 3D mesostructures and electronic devices based on dielectric elastomer platforms显示文摘The manufacture of 3D mesostructures is receiving rapidly increasing attention,because of the fundamental significance and practical applications across wide-ranging areas.The recently developed approach of buckling-guided assembly allows deterministic formation of complex 3D mesostructures in a broad set of functional materials;with feature sizes spanning nanoscale to centimeter-scale.Previous studies mostly exploited mechanically controlled assembly platforms using elastomer substrates;which limits the capabilities to achieve on-demand local assembly;and to reshape assembled mesostructures into distinct 3D configurations.This work introduces a set of design concepts and assembly strategies to utilize dielectric elastomer actuators as powerful platforms for the electro-mechanically controlled 3D assembly.Capabilities of sequential-local loading with desired strain distributions allow access to precisely tailored 3D mesostructures that can be reshaped into distinct geometries,as demonstrated by experimental and theoretical studies of?30 examples.A reconfigurable inductive-capacitive radio-frequency circuit consisting of morphable 3D capacitors serves as an application example. | Wenbo Pang Xu Cheng Haojie Zhao Xiaogang Guo Ziyao Ji Guorui Li Yiming Liang Zhaoguo Xue Honglie Song Fan Zhang Zheng Xu Lei Sang Wen Huang Tiefeng Li Yihui Zhang | 2020 | National Science Review2020，7，2： | 8 |
| 14 | Laser assembly nanostructured Al2O3/TiO2 coating on cast aluminum surface显示文摘CO2 laser quick assembly technology is adopted on the surface of cast aluminum ZL104 to form a dense ceramic coating containing a great deal of nanometer Al2O3/TiO2 particles which eliminate cracks and porosities.The major phases of the coating are α-Al2O3 andβ-TiO2. The micro-hardness distribution of the coating is 1 813,1 504, 1 485 and 1 232 (HV0.05). The bonding strength of the coating LC1 is 11.4 N, which is 7.26 times higher than that of the conventional hot-spraying Al2O3/TiO2 coating. It has been proved by analysis that the bonding strength is achieved because of the effects of both super-quick laser consolidation and the nanometer effect of nanometer ceramic material. | ZHANG Guang-jun DAI Jian-qiang WANG Hui-ping YAN Min-jie XI Wen-long ZOU Chang-gu GE Da-fang | 2004 | 中国有色金属学会会刊:英文版2004，14，z1： | 7 |
| 15 | A tip clearance prediction model for multistage rotors and stators in aero-engines显示文摘Tip clearances of multistage rotors and stators greatly affect aero-engines’ aerodynamic efficiency, stability and safety. The inevitable machining and assembly errors, as well as the complicated error propagation mechanism, cause overproof or non-uniform tip clearances. However, it is generally accepted that tip clearances are difficult to predict, even under assembly state. In this paper, a tip clearance prediction model is proposed based on measured error data. Some 3 D error propagation sub-models, regarding rotors, supports and casings, are built and combined. The complex error coupling relationship is uncovered using mathematical methods. Rotor and stator tip clearances are predicted and analyzed in different phase angles. The maximum, minimum and average tip clearances can be calculated. The proposed model is implemented by a computer program,and a case study illustrates its performance and verifies its feasibility. The results can be referred by engineers in assembly quality judgement and decision-making. | Huibin SUN Jing WANG Kai CHEN Huateng XIA Xin FENG Zhiyong CHANG | 2021 | Chinese Journal of Aeronautics2021，34，2： | 6 |
| 16 | Study on the relative radiometric correction of CBERS satellite CCD image显示文摘The main payload on CBERS-01/02 of China-Brazil Earth Resources Satellite (CBERS) is a push-broom CCD camera with moderate spatial and radiant resolution. Because at lab the data for calibration at satellite assembly stage were unable to be collected, and also because the onboard calibrator after launch was in a different state from imaging, the calibration of CCD image got a series of difficulties involved. In practice, two methods are used in the processing on the ground station: One is extracting calibration data by statistics from the image itself, and the other is the method of histogram match. It was proved that the latter can calibrate the image much better, because it can remove the effect of unstable response of the camera largely and also can overcome the nonlinearity of the camera basically by using Look-Up Table (LUT) calculated from histogram statistics of different temporal images. Considering the problems of CBERS-01, a lot of calibration tests were done before the launch of CBERS-02, in which a set of lab coefficients for relative calibration was formulated after the data collection by using integration-hemisphere in the stage of satellite assembly test. During the on-orbit test, it was found that the calibration result from such coefficients was not satisfying, especially there being response difference between 3 detector arrays, which was attributed to the unstable dark currents of the CCD camera. This paper comes up with a statistic method to remove such response difference. In this method the middle detector array was used as reference to find the response differences of adjacent similar features between these arrays and it was proved to have a broad adaptability. | GUO Jianning, YU Jin, ZENG Yong, XU Jianyan, PAN Zhiqiang & HOU Minghui China Center for Resource Satellite Data and Application, Beijing 100830, China | 2005 | Science China(Technological Sciences)2005，48，S2： | 6 |
| 17 | Location layout design of aircraft parts assembly based on MSVR显示文摘Location layout of aircraft assembly is an important factor affecting product quality.Most of the existing re-searches use the combination of finite element analysis and intelligent algorithm to optimize the location layout,which are limited by numerical simulation accuracy and the selection and improvement of intelligent algorithms.At present,the analysis and decision-making technology based on field data is gradually applied in aircraft manufacturing.Based on the perception data of intelligent assembly unit of aircraft parts,a regression model of multi-input and multioutput support vector machine with Gauss kernel function as radial basis function is established,and the hyperparameters of the model are optimized by hybrid particle swarm optimization genetic algorithm(PSO-GA).GA-MSVR,PSO-MSVR and PSOGA-MSVR model are constructed respectively,and their results show that PSOGA-MSVR model has the best performance.Finally,the design of the aircraft wing location layout is taken as an example to verify the effectiveness of the method. | Xining LI Zhihao ZHAO | 2020 | Chinese Journal of Aeronautics2020，33，5： | 6 |
| 18 | 计算机编程语言的演变显示文摘回顾了计算机语言发展的主要脉络,并对计算机语言的发展前景进行了展望。 | 邵长磊 吾际舟 刘斌 白玉宝 | 2009 | 农业网络信息2009，，11： | 6 |
| 19 | Preparation and characterization of a novel strong-fluorescent hydrotalcite-like compound (Al-HTLc)显示文摘A novel strong-fluorescent hydrotalcite-like compound (Al-HTLc) was synthesized by coprecipitation. In the sample, the content of aluminum(III) in the layers was decreased to a proper value. The Al3+ ions coordinated with 8-hydroxyquinolines (8-HQ) which were dispersed into the anions in the interlayer region. The sample was characterized by XRD, XPS, FT-IR, TG-DSC, UV-Vis, and fluorescence spec- troscopy; its composition and structure were also determined. The results indicate that the sample can emit fluorescence (487 nm) with a strong fluorescence intensity (4.9×105 (a.u.)). The fluorescent lifetime and fluorescence quantum yield of Al-HTLc were measured to be 21.24 ns and 67%, respectively, higher than those of pure 8-hydroxyquinoline aluminum (Alq3). The result of TG-DSC measurement clearly shows the enhanced thermal stability of Al-HTLc compared with that of MgAl-LDH and pure Alq3. Al-HTLc may be used as a novel luminescent functional material. | ZHANG WenGong CHEN Hong | 2008 | Science China Chemistry2008，51，9： | 6 |
| 20 | Formin-like 3 regulates RhoC/FAK pathway and actin assembly to promote cell invasion in colorectal carcinoma显示文摘AIM To clarify the underlying mechanism of formin-like 3(FMNL3)in the promotion of colorectal carcinoma(CRC)cell invasion.METHODS The in vitro biological function analyses of FMNL3 were performed by gain-and loss-of function approaches.Changes in the F-actin cytoskeleton were detected by the technologies of phalloidin-TRITC labeling and confocal microscopy.The signaling pathway mediated by FMNL3 was explored by western blot,gelatin zymograph assay,co-immunoprecipitation(co-IP),immunofluorescence colocalization,and glutathione S-transferase(GST)pulldown assay.RESULTS The in vitro experimental results showed that FMNL3 significantly promoted the proliferation,invasion,and migration of CRC cells(P<0.05 and P<0.01).Moreover,FMNL3regulated the remodeling of actin-based protrusions such as filopodia and lamellipodia in a RhoC-dependent manner.The western blot and gelatin zymograph assay results indicated that FMNL3 was involved in the RhoC/focal adhesion kinase(FAK)pathway and acted as an effector of RhoC to activate the downstream signaling of p-FAK as well as p-MAPK and p-AKT.This resulted in the increased expression of matrix metalloproteinase 2(MMP2),matrix metalloproteinase 9(MMP9)and vascular endothelial growth factor(VEGF),and the subsequent promotion of CRC cell invasion.The results of TAE226,U0126 or Ly294002 treatment confirmed an essential role of FMNL3 in activation of the RhoC/FAK pathway and the subsequent promotion of CRC invasion.Co-IP,colocalization and GST pull-down assays showed the direct interaction of FMNL3 with RhoC in vivo and in vitro.CONCLUSION FMNL3 regulates the RhoC/FAK signaling pathway and RhoC-dependent remodeling of actin-based protrusions to promote CRC invasion. | Yuan-Feng Zeng Yi-Sheng Xiao Yong Liu Xiao-Jiang Luo Li-Dan Wen Qian Liu Min Chen | 2018 | World Journal of Gastroenterology2018，24，34： | 5 |
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